PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00700
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 316aa    MW: 35069.4 Da    PI: 7.526
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00700genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.16.1e-13233257226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ktelC+ +++tG C+y d C+FaHg
  AA39G00700 233 KTELCNKWQETGACPYRDHCQFAHG 257
                 9***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.3E-17226264IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-10228263IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-7231258IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.652231259IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8233257IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-12265298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-8265300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.324269297IPR000571Zinc finger, CCCH-type
SMARTSM003560.0017269296IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MENQIAPFTD IASITDGVGM VKSGGEASAS AGSPSLFSNQ LIESSRSVMQ QHQDMVNRHA  60
LCLTRLRQAS LDAEALRLEN TKLRSINRDL NTQLDQLIRS SVQNHFDYNS TSLHVLNGLS  120
NLFIGGNSAC QGEDQNRVPG WDQISDESPT SVMENEDLER SSLPKSISVR SNEYTKASVV  180
AGAGPAGKSR GTITKPRTSG RITKSQKVYV RGGKKEEEED GIEVEVYNQG MTKTELCNKW  240
QETGACPYRD HCQFAHGIEE LRPVIRHPRY KTDVCRMVLA GDVCPYGHRC HFRHALTEQE  300
KPTMESGFKA KPLKLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A9e-21233298570Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00700
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010559234.11e-158PREDICTED: zinc finger CCCH domain-containing protein 15
RefseqXP_010559235.11e-158PREDICTED: zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F51e-127C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLV4KMB61e-128V4KMB6_EUTSA; Uncharacterized protein
STRINGXP_010559234.11e-158(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-123C3H family protein