PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00622
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Dof
Protein Properties Length: 338aa    MW: 37908.8 Da    PI: 7.8177
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00622genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.91.9e-3794153261
      zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                 ++k+l+cprC+s++tkfCyynny+++qPryfC++C+ryWt+GG++r vP+G+grrknk +
  AA39G00622  94 PDKILPCPRCKSSDTKFCYYNNYNVNQPRYFCRNCQRYWTAGGSMRSVPIGSGRRKNKGW 153
                 7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-2991151IPR003851Zinc finger, Dof-type
PfamPF027017.2E-3196151IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.09998152IPR003851Zinc finger, Dof-type
PROSITE patternPS013610100136IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSDSAVKLFG WTMPSLFLPL SSSSSSSSSS PPLMVNDGFV SDNKNELDNK SIEISSSDFE  60
PKEVSENNSS DQQSEITTTT STTSEDKTLN LKKPDKILPC PRCKSSDTKF CYYNNYNVNQ  120
PRYFCRNCQR YWTAGGSMRS VPIGSGRRKN KGWASSDHNY LQINSENTQN STKILTFGSS  180
NSSISEDTKI ASESTSPQGF LPQQVTFPVS SPWPNQQWST TSSTQAGFYP MPVYWACTVP  240
FWPTQETVTT STSLGKRSRD DQTSDESDQS IDDELRLGHK NHVWSPVAMR HESKERLSFF  300
NGFESKSSNR RVMVPQNAHN LQANPAAMAR SMSFRERM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00622
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390998.11e-105cyclic dof factor 5
SwissprotQ9LQX41e-106DOF13_ARATH; Dof zinc finger protein DOF1.3
TrEMBLE4MY851e-104E4MY85_EUTHA; mRNA, clone: RTFL01-45-E10
TrEMBLV4KB081e-104V4KB08_EUTSA; Uncharacterized protein
STRINGBostr.12659s0320.1.p1e-111(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM130901729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26790.12e-95Dof family protein