PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00494
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 172aa    MW: 18875.3 Da    PI: 9.2494
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00494genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.54e-1974131155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpseng..kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++++GVr+++ +g+W+AeIr+ +  g  k    r +lg+f taeeAa a+++a+ +l g
  AA39G00494  74 KKFRGVRQRP-WGKWAAEIRCGRAHGhrKGrpDRLWLGTFETAEEAALAYDNAAIQLIG 131
                 59********.**********77767763369**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.7E-371172IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000184.15E-2574138No hitNo description
SMARTSM003804.4E-2875147IPR001471AP2/ERF domain
PROSITE profilePS5103221.36475139IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-1875139IPR016177DNA-binding domain
PfamPF008472.6E-1375131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-2775138IPR001471AP2/ERF domain
PRINTSPR003673.2E-117687IPR001471AP2/ERF domain
PRINTSPR003673.2E-11105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MKRIVRISFT DVEATDSSSS EDEDRGASPS RRRGKRLVKE IVIDPSDSSG KIEVGKTRFK  60
IRIPAEFLGA TGKKKFRGVR QRPWGKWAAE IRCGRAHGHR KGRPDRLWLG TFETAEEAAL  120
AYDNAAIQLI GPDAPTNFGC PEVVAPVMKQ DPEVESDAGA SSEKTPEADV IV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-18751381471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00494
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416134.12e-80ethylene-responsive transcription factor ERF069
SwissprotQ9C9952e-71ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLV4KWU55e-79V4KWU5_EUTSA; Uncharacterized protein
STRINGXP_006416134.19e-80(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.12e-58ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]