PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA39G00188

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

MYB_related

Protein Properties

Length: 292aa MW: 31895.7 Da PI: 9.6547

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA39G00188	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.7	1.3e-13	107	151	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E++l++ + ++ G+g+Wk I+r + k Rt+ q+ s+ qky AA39G00188 107 PWTEDEHKLFLLGLQKVGKGDWKGISRNFVKSRTPTQVASHAQKY 151 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.991	100	156	IPR017930	Myb domain
SuperFamily	SSF46689	7.48E-17	102	157	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-17	103	154	IPR006447	Myb domain, plants
SMART	SM00717	7.5E-9	104	154	IPR001005	SANT/Myb domain
CDD	cd00167	7.16E-9	107	152	No hit	No description
Pfam	PF00249	2.0E-10	107	151	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-10	107	151	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MAAVSSSSEE AGGGYGGGIA RREIMLFGVR VVVDPMRKCV SLNNLSDYEQ PAMDEIPKII 60 IGGGERNGED KNEADLTIAA GGYASANDAV QISSSSLGNR ERKRGIPWTE DEHKLFLLGL 120 QKVGKGDWKG ISRNFVKSRT PTQVASHAQK YFLRRSNLNR RRRRSSLFDM TADTVTGMHM 180 EQDQLPPAQE NTSQSQPLVP ETKRNPEHLI MQVFPITVPT TTGTASSYSS SNLIPVTFQS 240 QPFNLNKDAT NPTPLSLNLS LASSVNLNTR HSMMSSFSNG DSNSNSSFIR VA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00149	DAP	Transfer from AT1G19000	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA39G00188

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006416544.1	1e-111	transcription factor MYB1R1
Refseq	XP_024008815.1	1e-111	transcription factor MYB1R1
Swissprot	Q2V9B0	1e-59	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	E4MX29	1e-109	E4MX29_EUTHA; mRNA, clone: RTFL01-16-O16
TrEMBL	V4KXY1	1e-109	V4KXY1_EUTSA; Uncharacterized protein
STRING	XP_006416544.1	1e-110	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2461	26	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	1e-85	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]