PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA39G00166

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

M-type_MADS

Protein Properties

Length: 395aa MW: 46046.2 Da PI: 6.8464

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA39G00166	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	73.8	1.4e-23	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRr gilKKA+ELS+LCd+++ +++fs+tg+ AA39G00166 9 KRLESTSNRQVTYSKRRSGILKKAKELSILCDIDIVLLMFSPTGR 53 689****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.455	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.2E-32	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.23E-27	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.67E-28	2	82	No hit	No description
PRINTS	PR00404	2.4E-19	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.6E-21	11	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-19	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-19	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MGRVKLKIKR LESTSNRQVT YSKRRSGILK KAKELSILCD IDIVLLMFSP TGRPTVFHGE 60 HSCIEDVIAK FSQLTPQERT KRKLESLEAL KKTFKKLDHD VNIHEFLGAR NQTIEGLSSQ 120 VAVFQSQIME CHRRLSCWTN IERIDNTEHL NILEETLRKS IERIQVHKVC LIFSLIKTGK 180 ILEIDVYMRY EKTIFAFLQE HFRKNQLMPL ECTTQFHSGI SLPLAMGGLQ EAHSMSWFPE 240 NDNQQTILPG DNSSFLHHRD IEGSIPVYSN CFFESMKQED QICNTGQQPH QQQLEQQIEQ 300 EGNRCLNIQQ LGEAYSFQTP FGATLLMEEE KKIESEMEFN LQHQQQHQDP AIMFHHQTVN 360 NGFHDQSMFA THHHHHQNWV QDSMFGQTSY NQQPN

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MGRVKLKIKR LESTSNRQVT YSKRRSGILK KAKELSILCD IDIVLLMFSP TGRPTVFHGE  60
HSCIEDVIAK FSQLTPQERT KRKLESLEAL KKTFKKLDHD VNIHEFLGAR NQTIEGLSSQ  120
VAVFQSQIME CHRRLSCWTN IERIDNTEHL NILEETLRKS IERIQVHKVC LIFSLIKTGK  180
ILEIDVYMRY EKTIFAFLQE HFRKNQLMPL ECTTQFHSGI SLPLAMGGLQ EAHSMSWFPE  240
NDNQQTILPG DNSSFLHHRD IEGSIPVYSN CFFESMKQED QICNTGQQPH QQQLEQQIEQ  300
EGNRCLNIQQ LGEAYSFQTP FGATLLMEEE KKIESEMEFN LQHQQQHQDP AIMFHHQTVN  360
NGFHDQSMFA THHHHHQNWV QDSMFGQTSY NQQPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-13	1	92	1	90	MEF2C
5f28_B	2e-13	1	92	1	90	MEF2C
5f28_C	2e-13	1	92	1	90	MEF2C
5f28_D	2e-13	1	92	1	90	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA39G00166

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY143172	1e-157	AY143172.1 Arabidopsis thaliana MADS-box protein AGL65 (AGL65) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013660239.1	0.0	agamous-like MADS-box protein AGL65
Swissprot	Q7X9I0	0.0	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A3P5YL32	0.0	A0A3P5YL32_BRACM; Uncharacterized protein
STRING	Bostr.7128s0485.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5933	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-176	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]