PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00040
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 584aa    MW: 64810.6 Da    PI: 6.4542
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00040genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.9e-08471519348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v+++G g W+ I r        Rt  ++k++w++++
       AA39G00040 471 AWTLSEVIKLVEGVAKYGVGKWSEIKRFSFsssSYRTSVDLKDKWRNLR 519
                      7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.675464523IPR017930Myb domain
SuperFamilySSF466891.42E-15466526IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-12466524IPR009057Homeodomain-like
SMARTSM007175.2E-9468521IPR001005SANT/Myb domain
CDDcd116601.03E-18470520No hitNo description
PfamPF002496.7E-6471519IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MGAIVGTVED YGEMFRDSIV QTSGAPLCST KQIGNPVVYK LVRVAVDGRL VPATDEEILE  60
VTDLLENNEK DMPILTDPGQ TRGYTPGEGS PSQLLQIESL EGLFQSETAE AYASKLNSRL  120
EEPTLFSSNC QIGCSMDQSI DVVPHSNATG SPKETALSNT PQKPEFSQVR GEICLDKLSI  180
KELQETFKVT FGRETTVKDK LWLKRRIAMG LINSCVVPTT SLIFEDNKLV GDQEKYNDFD  240
DLSKDMTEER SATICKDVPS SPDYIKGHSN ASGHSPFETF GDHYSGNEDF EGEHRAAKRV  300
RKPTKRYIEE QLCDESMIPL KDQRISPKSQ MDSVTGVSSG GRVVVTRMVS LGGSKIQVPY  360
VSHVRRSRPR ENIMALGEFH CSSWENKAIP AESKLNLSSS ELNNDVNRVS VQKECSTDYQ  420
TSNDNSKPVF ADVDKETEPD HIDSSGRDSS DDNSTGVPNT QGGIRRKHHR AWTLSEVIKL  480
VEGVAKYGVG KWSEIKRFSF SSSSYRTSVD LKDKWRNLRK ASFSQTPSNK MGSIRKHGSM  540
AIPAQILLQV RELVEKQTRV SQVSKANGDS NSPRMVKESR NGFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008695.10.0uncharacterized protein LOC18993148
TrEMBLR0GPJ10.0R0GPJ1_9BRAS; Uncharacterized protein
STRINGBostr.7128s0357.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.10.0TRF-like 3