PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00031
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family M-type_MADS
Protein Properties Length: 203aa    MW: 22781 Da    PI: 9.6536
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00031genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.31.5e-213987149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k i+++s+rqvtfskRr g++KK  EL+vL++a++avi fs  g++y +
  AA39G00031 39 KEIKEESKRQVTFSKRRRGLFKKSAELCVLTGAKIAVITFSRCGRVYRF 87
                689********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.5353191IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-223190IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-2132105IPR002100Transcription factor, MADS-box
CDDcd002665.03E-2532100No hitNo description
PRINTSPR004049.8E-183353IPR002100Transcription factor, MADS-box
PfamPF003199.9E-214187IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-185368IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-186889IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MEEVKETPLL SCLKSKAQNP NETKQNPKAT RGRQKVEIKE IKEESKRQVT FSKRRRGLFK  60
KSAELCVLTG AKIAVITFSR CGRVYRFGQV DALIEKYLRK IPVKLEVYSG DDVAEEGGGA  120
WWDRPVESVP EEELGDYEAA LRGLRDSLGK KIWEMGNDNR MAEIVQAQVN QTAGNNLLEW  180
RPMEGAGQSL GNLTAGINRS RLG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00031
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117708.12e-74PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLM4ED146e-73M4ED14_BRARP; Uncharacterized protein
STRINGBra026674.1-P9e-74(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17310.13e-63M-type_MADS family protein