PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA38G00103
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 279aa    MW: 31846.5 Da    PI: 5.6752
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA38G00103genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.59.9e-1873126356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k+++++ eq+++Le+ Fe  +++  e++ +LA+ l+L+ rq+ +WFqNrRa++k
  AA38G00103  73 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALNLQPRQIAIWFQNRRARWK 126
                 456899***********************************************9 PP
2HD-ZIP_I/II1284e-4173163292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kkrrl+ eqvk+LE++Fe  +kLeperK++lar+L+lqprq+a+WFqnrRAR+ktkqlEkdy++Lkr++d+lk+ene L++++++L+ +++
   AA38G00103  73 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALNLQPRQIAIWFQNRRARWKTKQLEKDYDTLKRQFDNLKAENEILQTHNHKLQLQIM 163
                  9*************************************************************************************98886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.05E-1963130IPR009057Homeodomain-like
PROSITE profilePS5007116.95768128IPR001356Homeobox domain
SMARTSM003891.3E-1671132IPR001356Homeobox domain
PfamPF000464.3E-1573126IPR001356Homeobox domain
CDDcd000866.50E-1673129No hitNo description
Gene3DG3DSA:1.10.10.602.0E-1875135IPR009057Homeodomain-like
PROSITE patternPS000270103126IPR017970Homeobox, conserved site
PfamPF021831.7E-15128169IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSCSNGMSFF PPNYLLQNSF NEENHHPQSL LPQDLHVSGF TSFLGKRSPV NNIESCCDLE  60
EDYSDEGSQM GDKKRRLNME QVKTLEKNFE LGNKLEPERK MQLARALNLQ PRQIAIWFQN  120
RRARWKTKQL EKDYDTLKRQ FDNLKAENEI LQTHNHKLQL QIMALKSKEP TESINLNKDT  180
EGSCSNRSDN TSDNLRLDIA TAPPSIESTL TGGQPPVGGT DGRQLFSPAS APTTTTMQFF  240
QNSTSGQSMV KEENSMSNMF CGIDDQTGFW PWLDNQQYH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120128RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA38G00103
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020865618.11e-150homeobox-leucine zipper protein ATHB-13
SwissprotQ8LC031e-150ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLD7KXJ41e-148D7KXJ4_ARALL; ATHB13
STRINGBostr.10273s0385.1.p1e-149(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26332770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-152HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]