PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA33G00295
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 268aa    MW: 30901.6 Da    PI: 5.2116
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA33G00295genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3375.9e-12160243378
                 EE-..-HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
          B3   3 kvltpsdvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                 k+l+ sdv+ + +rl+l kk +++         +++ +e++++ ++ ++g+s e+k+++++k+ + vl++GW++Fvk+ +L+   
  AA33G00295 160 KQLMESDVNGKqCRLMLRKKEVKDKflclleesEIPGTEGIDVLVYGPDGESHELKFKMWNKD-TPVLANGWSKFVKDYELQKYS 243
                 899999997665**********999*****9987777799***********99999999*997.679**************9654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037547.6E-6155235IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.106.8E-13156262IPR015300DNA-binding pseudobarrel domain
CDDcd100174.19E-13156263No hitNo description
SuperFamilySSF1019369.42E-13157251IPR015300DNA-binding pseudobarrel domain
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MIAKDYPSHH HTEQDSDSSE DSSDESTKED SDSSSSSSDE STEYSSDSSD NESEQGTNNE  60
QENPKEAALI KNPKLAAVIK KRKSVIKKPD PIYKDEENED IVIQKQHKRR KIVKEEDNRE  120
EMFQRRKIVN NGESEILPPD RIISKIPNTV AVKFSRCISK QLMESDVNGK QCRLMLRKKE  180
VKDKFLCLLE ESEIPGTEGI DVLVYGPDGE SHELKFKMWN KDTPVLANGW SKFVKDYELQ  240
KYSNVVKIWM FKRSEDAKLC FVIDSIRF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA33G00295
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.12e-38B3 family protein