PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA33G00294
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 460aa    MW: 52870.4 Da    PI: 7.9364
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA33G00294genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3322.2e-10148232376
                 EE-..-HHHHT.T-EE--HHH.HTT..........---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
          B3   3 kvltpsdvlks.grlvlpkkfaeeh..........ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                 k+lt sdv+   +r+ l  k +++h          +   +   e++ + ++ ++g+s e+k++++ k++ +vl kGW++Fvka gL+ 
  AA33G00294 148 KQLTESDVNVVqSRVALGTKQVKDHflcyleeseiS---RlyiEGINVLVYGPDGKSHEMKFKVWMKKNNHVLNKGWNQFVKAYGLRK 232
                 556666655433667777777777777776544331...14447789************99999**********************85 PP
2B332.81.3e-10351449390
                 EE-..-HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS.SEE CS
          B3   3 kvltpsdvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr.sef 90 
                 k+lt+sdv+   +rl l  k +++         +++  e++++ ++ ++g+s e+k+++++k  + vl++GW++Fvka +L+   D+v + + +r +++
  AA33G00294 351 KQLTQSDVSVGqSRLLLREKEVKDKflclleesEIPGVEGVDVLVYGPDGESHEMKFKMWNKNMTPVLANGWSQFVKAYELQkCSDVVKIWMFKRsEDG 449
                 88899998765478888999998889999988755555999*********999999999**********************956777765544444555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037545.0E-8144226IPR005508B3 domain-containing protein
CDDcd100175.01E-14144231No hitNo description
Gene3DG3DSA:2.40.330.102.4E-12145232IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-13145233IPR015300DNA-binding pseudobarrel domain
PfamPF037541.2E-5346427IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.101.9E-13347456IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-14347455No hitNo description
SuperFamilySSF1019361.96E-12348447IPR015300DNA-binding pseudobarrel domain
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MMAKDDSSSS SFQDYCSSPS EDSSSSEDSS DSSDNESEQG NNDQQEPPKA AALIKKPEAA  60
VIKKQEAVIK KQEAVIKKHE AVIKKQESVI KKQETPRKVM EFDDREETLQ LVLQRVNNGD  120
REIPPPLKIV SKIPINEVEF IMSKCIYKQL TESDVNVVQS RVALGTKQVK DHFLCYLEES  180
EISRLYIEGI NVLVYGPDGK SHEMKFKVWM KKNNHVLNKG WNQFVKAYGL RKYSHLLRIW  240
MFRTTQDRQI CFAIDPIRFD GITKPLNYSA SLSLKDSSTD PIYKDEENEE IVTQKQHKRR  300
KIVKEEDKRE EITCQRRKIV NNGESEILPP DRITSKIPNA VAVKFSRCIS KQLTQSDVSV  360
GQSRLLLREK EVKDKFLCLL EESEIPGVEG VDVLVYGPDG ESHEMKFKMW NKNMTPVLAN  420
GWSQFVKAYE LQKCSDVVKI WMFKRSEDGK ICFVIDSIRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA33G00294
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.11e-33B3 family protein