PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA33G00289
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 245aa    MW: 28205.9 Da    PI: 4.6668
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA33G00289genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3331e-10148229376
                 EE-..-HHHHT.T-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
          B3   3 kvltpsdvlks.grlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                 k+lt sdv+   +rl+l k+ +++                e++++ ++ ++g+s e+k+++++k+ + vl++GW++Fvk+ +L+ 
  AA33G00289 148 KQLTESDVNGGqSRLMLGKQEVKDKflclleaseiR--GVEGIDVLVYGPDGESHEMKFKMWNKD-TPVLANGWSKFVKDYELQK 229
                 89999999876699********999****9998554..448899********999999998*997.679*************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100173.31E-13144228No hitNo description
Gene3DG3DSA:2.40.330.106.8E-12144232IPR015300DNA-binding pseudobarrel domain
PfamPF037541.9E-5144223IPR005508B3 domain-containing protein
SuperFamilySSF1019369.02E-13145230IPR015300DNA-binding pseudobarrel domain
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MMTQDYSPDE IESVDPINEL AFLLMVTQTY SHDVIQGALD LCFLKFTKVS AINQEEEENK  60
VVIQENNNGE PKKLEVVSKT QPVINNPSPL NMIKKQRKTR TIVEEDNREE TLQLLLRRIK  120
NGDEEIPPSD TIVSKIPNEV ELSRCIYKQL TESDVNGGQS RLMLGKQEVK DKFLCLLEAS  180
EIRGVEGIDV LVYGPDGESH EMKFKMWNKD TPVLANGWSK FVKDYELQKY SNVVKIWMFK  240
RSEDX
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA33G00289
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022556308.12e-33putative B3 domain-containing protein At4g03170
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.16e-30B3 family protein