PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA33G00143
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 82aa    MW: 9380.33 Da    PI: 9.5276
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA33G00143genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding315.8e-101559345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+  d+l+  a + + ++   +W  +ar +g g+++++++ ++ 
       AA33G00143 15 SWTAKQDKLFEMALATYDKDtpdRWQNVARAVG-GKSAEEVRRHYE 59
                     7********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.7321166IPR017884SANT domain
SMARTSM007173.6E-91264IPR001005SANT/Myb domain
SuperFamilySSF466892.62E-131470IPR009057Homeodomain-like
PfamPF002494.0E-81559IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-41562IPR009057Homeodomain-like
CDDcd001674.05E-71662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MASNSISASR SSNSSWTAKQ DKLFEMALAT YDKDTPDRWQ NVARAVGGKS AEEVRRHYEL  60
LIRDVNDIES GRYPQPKYRN TN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-29682177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA33G00143
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298896.15e-43protein RADIALIS-like 4
SwissprotQ6NNN01e-37RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A1J3I9U84e-42A0A1J3I9U8_NOCCA; Protein RADIALIS-like 4
STRINGCagra.14142s0003.1.p2e-42(Capsella grandiflora)
STRINGXP_006298896.12e-42(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18328.12e-38RAD-like 4