PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA33G00123
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 173aa    MW: 20132.4 Da    PI: 4.8579
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA33G00123genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.6e-191063457
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                ++++++eq++ Le  F  ++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  AA33G00123 10 KRKLSDEQVRLLEISFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKN 63
                45899***********************************************95 PP
2HD-ZIP_I/II121.83.5e-39999292
  HD-ZIP_I/II  2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
                 +kr+ls+eqv+lLE sF  e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+a+++++ e+++L++ev +L+e+l 
   AA33G00123  9 RKRKLSDEQVRLLEISFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYSKLKNAHENVVVEKCKLDSEVLHLKEQLY 99
                 8***************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.503464IPR001356Homeobox domain
SuperFamilySSF466893.21E-18672IPR009057Homeodomain-like
SMARTSM003895.3E-19768IPR001356Homeobox domain
CDDcd000867.65E-17965No hitNo description
PfamPF000461.6E-161063IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-201171IPR009057Homeodomain-like
PRINTSPR000316.7E-63544IPR000047Helix-turn-helix motif
PROSITE patternPS0002703962IPR017970Homeobox, conserved site
PRINTSPR000316.7E-64460IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MESSNGWFRK RKLSDEQVRL LEISFGDEHK LESERKDRLA AELGLDPRQV AVWFQNRRAR  60
WKNKRLEEEY SKLKNAHENV VVEKCKLDSE VLHLKEQLYD AEREIQRLAE KVQGGLNNSP  120
ISSSVSVEAN QTPFFGDYNV DGDVNGGDFP YGNLFYPSPE YIDGIDQWMS PYM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA33G00123
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024016587.12e-90homeobox-leucine zipper protein ATHB-21 isoform X2
SwissprotQ9ZU703e-87ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A3P6DCZ77e-95A0A3P6DCZ7_BRAOL; Uncharacterized protein
STRINGXP_006409134.17e-90(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.13e-84homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]