PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA33G00102
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 327aa    MW: 38681.4 Da    PI: 6.1293
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA33G00102genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1713.7e-5361351129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                 +ppGfrFhPtdeelv +yL+kk++++k++l evik++d+y++eP dL++  ++ + e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v++ k
  AA33G00102   6 VPPGFRFHPTDEELVGYYLRKKIASQKIDL-EVIKDIDLYRIEPCDLQEicRIGHdEQNEWYFFSHKDKKYPTGTRTNRATMTGFWKATGRDKTVYD-K 102
                 69****************************.99**************954544442556**************************************.9 PP

         NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                 ++l+g++ktLvfykgrap+g+k+dW++heyrle
  AA33G00102 103 TKLIGMRKTLVFYKGRAPNGRKSDWIIHEYRLE 135
                 99*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-583155IPR003441NAC domain
PROSITE profilePS5100557.1366155IPR003441NAC domain
PfamPF023658.8E-287134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MESCSVPPGF RFHPTDEELV GYYLRKKIAS QKIDLEVIKD IDLYRIEPCD LQEICRIGHD  60
EQNEWYFFSH KDKKYPTGTR TNRATMTGFW KATGRDKTVY DKTKLIGMRK TLVFYKGRAP  120
NGRKSDWIIH EYRLESDENA PPQEEGWVIC RAFKKRPTGQ IKNMETLNSN YFYDHELLNS  180
IQDPLNHMSK QQHNMFKQEQ DYIKSNQFIR FPQLENTSNF MSSRTSMENE SNFKISLENA  240
QKNIKKKKMV KGDWRELDKF VASQFMNHQD FGVSNFADYQ EVKEYDDDIE IDSSSSLLLL  300
SEKDEENKFI SEFLSNNSDY EIGIFNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-48515614169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA33G00102
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001318244.11e-164vascular related NAC-domain protein 1
RefseqNP_179397.11e-164vascular related NAC-domain protein 1
SwissprotQ9SL411e-165NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A178VM151e-163A0A178VM15_ARATH; VND1
STRINGAT2G18060.11e-164(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36862661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-157vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]