PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G01067
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 310aa    MW: 35220.5 Da    PI: 8.1586
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G01067genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.3e-08127147526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C+ f++ G C+ Gd+C FaHg
  AA32G01067 127 ACPEFRK-GSCRKGDSCEFAHG 147
                 7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.77574111IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5122148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.281123149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5126149IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-6127147IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.643157181IPR000571Zinc finger, CCCH-type
SMARTSM0035614157180IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061157Biological ProcessmRNA destabilization
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003727Molecular Functionsingle-stranded RNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MMIGENRRPH PTIQIPSWDQ INDPTATIST PFSSGSDYPY STSPYMESLA PLYRYLPSNE  60
FANESDSSSG DEFPLDSFAC DEFRMYEFKV RRCARGRSHD WTECPFAHPA EKARRRDPRK  120
YHYSGTACPE FRKGSCRKGD SCEFAHGVFE CWLHPARYRT QPCKDGTSCR RRVCFFAHTP  180
EQLRCEPDLG YSSIRNRFES HLSKSETSTS ILISPPISPS SASPPLSPTP GELIASIREM  240
QLSGCRSWGS PMRSGLGLPF TSSLRPKLNK RFNLWENAPR EEEPSMEVVE SGKELRAKMY  300
ARLSKENSLG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G01067
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408830.11e-151zinc finger CCCH domain-containing protein 23
SwissprotO823071e-137C3H23_ARATH; Zinc finger CCCH domain-containing protein 23
TrEMBLA0A1J3FL651e-160A0A1J3FL65_NOCCA; Zinc finger CCCH domain-containing protein 23 (Fragment)
STRINGXP_006408830.11e-151(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.21e-135C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]