PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00733
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 381aa    MW: 42219.1 Da    PI: 8.6214
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00733genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013134157123
                 EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                 ++C+ Cg+ Fs  ++L++H    H
  AA32G00733 134 FPCTTCGEIFSATHLLEHHFAIkH 157
                 89*****************77666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576124No hitNo description
PROSITE profilePS501578.933134162IPR007087Zinc finger, C2H2
PROSITE patternPS000280136157IPR007087Zinc finger, C2H2
SuperFamilySSF563991.53E-11159380No hitNo description
Gene3DG3DSA:3.90.228.107.4E-5311380IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MAARKLGDLL RQHFLSLFFL VLGCFFFPRS DVRQNKRRKK KKLRGVSSSP STSALSSSWS  60
YLKRVFLSTT RISKSRNQTH PNVAIATLTS ARSSQNSLVT LVQPETTNQL DTESHGFSEI  120
SSEPLFFPLR NDIFPCTTCG EIFSATHLLE HHFAIKHAVS ELIDGESSTN IVKIIFNSGW  180
PNHVNKIPEI HRVLKIHNSP KILARFEEYR EFVKTKAARN GGGASGRRWD DERCVADGNE  240
LLRFYCSTFM CNLGQNGNSS LCGHQYCSIC GIIGSGFSPK LDGIATLATG WRGHVAVPDE  300
VEEEFGFMNV KRAMLVCRVV AGRVGSDSMV DDVEKSDGGY DSLVGQGSRS ASGALLRIDD  360
EELLVFNPRA VLPCFVIVYT T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13341QNKRRKKKK
23541KRRKKKK
33642RRKKKKL
43743RKKKKLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00733
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410025.10.0uncharacterized protein LOC18027693
TrEMBLA0A1J3E5S10.0A0A1J3E5S1_NOCCA; Uncharacterized protein
STRINGXP_006410025.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-158C2H2 family protein