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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA32G00659 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | B3 | ||||||||
Protein Properties | Length: 807aa MW: 89410.7 Da PI: 7.5482 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.2 | 8.1e-15 | 293 | 374 | 1 | 79 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 f+k+l+ sd+++ grlvlpk +ae++ +++ e++ l+++d +g++W++++++ +++s++yvl+ G ++ L++gD+ AA32G00659 293 FEKTLSASDAGRIGRLVLPKACAEAYfpPINQSEGIPLKIQDVKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMMLQAGDT 374 99**************************777788999***************9989999999***9.***************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS01359 | 0 | 34 | 91 | IPR019786 | Zinc finger, PHD-type, conserved site |
SuperFamily | SSF101936 | 1.44E-15 | 290 | 374 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-23 | 290 | 375 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.90E-19 | 291 | 374 | No hit | No description |
PROSITE profile | PS50863 | 9.291 | 293 | 400 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.1E-12 | 293 | 399 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.7E-12 | 293 | 374 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.35 | 551 | 601 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.6E-8 | 556 | 598 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 807 aa Download sequence Send to blast |
MGSKMCMNAL CASTSTFEWK KGWPLRSGVL ADLCHRCGSA YENSLFCDTF HVDQSGWREC 60 CLCSKRLHCG CIASKYLVEL LDFGGISCTT CANCHQLNVT KRSENQDVFG RMPMKTLADR 120 QHINGESGMI GNSIDGGRNE ADRFSQTLLS GDKREEFISH HGFGKLLKSE NVRYRLETGE 180 IQESPSQPSL NMALAVIPYS SSFSTGVSEG KKHITASNSH ILQCSTSVLP KPSKSVLASP 240 SATSKSAQTR IGRPPVEGRG KGHLLPRYWP KYTDKELQQI SGNSLNLNIT PLFEKTLSAS 300 DAGRIGRLVL PKACAEAYFP PINQSEGIPL KIQDVKGKEW TFQFRFWPNN NSRMYVLEGV 360 TPCIQSMMLQ AGDTGIAQYP INSFRVDPGG KLVMGSRKAA NAGDQQGCAL TNGTSAEDTS 420 SSGVTETPSS INASSYPSQI PKELKGLPES SPDGGNSLKK SENNGSRICD DSPPRAKDKK 480 RTRTIGTKNK RLHLHSEEAM ELRLTWEEAQ DLLRPSPTAK STFSTIEDYE IEEFDEPPVF 540 GKKAIITSTP SGGQEQWAPC DDCSKWRRLP VEAFLPLRWT CSDNVWDEDR CSCSSPEESL 600 KELENVLKVG REYKRRRIGE RETATREQNV SGLDALASAA VLGDALGENN VEPEVATTTR 660 HPRHRAGCSC IVCIQPPSGK GRHKPNCSCN VCNTVKRRFK TLMMRRRKKQ LEREGPAEEK 720 EEVQKAESDN INKNKPEKED NTGRIDLNSD PYNREDMETV VMDKDESRKR EAEQCLVREE 780 GVVQGSDVGV VTELKEDGVK ICEEPRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 4e-77 | 270 | 407 | 2 | 132 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 613 | 617 | KRRRI |
2 | 695 | 708 | KRRFKTLMMRRRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1. {ECO:0000269|PubMed:15894743, ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA32G00659 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006410148.1 | 0.0 | B3 domain-containing transcription repressor VAL1 | ||||
Swissprot | Q8W4L5 | 0.0 | VAL1_ARATH; B3 domain-containing transcription repressor VAL1 | ||||
TrEMBL | V4NXH2 | 0.0 | V4NXH2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006410148.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6923 | 24 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 0.0 | high-level expression of sugar-inducible gene 2 |