PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00603
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 188aa    MW: 20979.4 Da    PI: 8.422
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00603genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.6e-173177352
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                y+GVr ++ +g+++AeIrd + ng   r++lg+f+ aeeAa a+++a+ +
  AA32G00603 31 YRGVRKRP-WGKFAAEIRDSTRNG--IRVWLGTFDKAEEAALAYDQAAFA 77
                9*******.**********44465..*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.9E-343094IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-283089IPR001471AP2/ERF domain
PfamPF008471.7E-113077IPR001471AP2/ERF domain
PROSITE profilePS5103221.8253088IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-213190IPR016177DNA-binding domain
PRINTSPR003672.8E-103142IPR001471AP2/ERF domain
CDDcd000181.27E-273189No hitNo description
PRINTSPR003672.8E-105470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MIKEEETHQN DAVSPLEEST TTTTDEQERS YRGVRKRPWG KFAAEIRDST RNGIRVWLGT  60
FDKAEEAALA YDQAAFATKG VLAILNFPVE IVKESLKKME NVNLYDGGSP VMALKKKHSL  120
RNRPRGKKRS IIPVNSSSSS SSSSSSSSSS SRIDKKNYFV KQESDDTLVF EDLGAEYLEQ  180
LLMSSCSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-272991466ATERF1
3gcc_A3e-272991466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00286DAPTransfer from AT2G31230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00603
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6557386e-34AY655738.1 Nicotiana tabacum ERF transcription factor 5 (ERF5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_850162.16e-83ethylene-responsive element binding factor 15
SwissprotQ8VYM05e-84ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A087GMY21e-82A0A087GMY2_ARAAL; Uncharacterized protein
STRINGA0A087GMY22e-83(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.12e-70ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]