PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00513
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 741aa    MW: 82076 Da    PI: 7.3882
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00513genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.5e-1961117157
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                 r++ +++t+ q++e+e++F ++++p+ ++r+eL+++lgL+  q+k+WFqN+R+++k+
  AA32G00513  61 RKRYHRHTQFQIQEMEAFFLECPHPDDKQRKELSRQLGLEPLQIKFWFQNKRTQMKN 117
                 789999************************************************995 PP
2START1662.6e-522464652206
                 HHHHHHHHHHHHHHHC-TT-EEEE.........EXCCTTEEEEEEESSS..SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   2 laeeaaqelvkkalaeepgWvkss.........esengdevlqkfeeskv.dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 la  a++e++++a++++p+Wv            e e+  ++++ f +  + +++ea++ +gvv+m+++  ve l+d++ qW+++++     a t+ev+s
  AA32G00513 246 LAVGAMDEFMRMAQVDQPLWVVTGrnetelalnEDEYARVYYKGFGPRLAgSRIEASKGTGVVIMNHVSIVEMLMDVN-QWSTMFTgmvsNALTHEVLS 343
                 67889****************9888888888888888888888886654499**************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX. CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp. 177
                 sg      g+lqlm+ae+ ++sp+v+ R++ fvRy++q+g+g w++vdvSvds  ++++     R++++pSg++i+++sng skvtwvehv++++++  
  AA32G00513 344 SGvpgnisGTLQLMSAEFHVPSPIVSgRESSFVRYCKQQGDGLWAVVDVSVDSFHSNSQ----NRCRRRPSGCMIQEMSNGCSKVTWVEHVEVDDNVRs 438
                 ******************************************************99996....9*********************************99 PP

                 HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 178 hwllrslvksglaegaktwvatlqrqcek 206
                 h+ +++++++     ak+wvatl+r ce+
  AA32G00513 439 HQTFQQVISKA--LSAKRWVATLERKCER 465
                 ********986..569***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-2042116IPR009057Homeodomain-like
SuperFamilySSF466892.42E-1943118IPR009057Homeodomain-like
PROSITE profilePS5007116.5258118IPR001356Homeobox domain
SMARTSM003891.4E-1859122IPR001356Homeobox domain
CDDcd000861.03E-1860119No hitNo description
PfamPF000468.6E-1761116IPR001356Homeobox domain
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PROSITE profilePS5084835.703236468IPR002913START domain
SuperFamilySSF559611.21E-29239466No hitNo description
CDDcd088751.33E-100240464No hitNo description
SMARTSM002342.6E-43245465IPR002913START domain
PfamPF018529.3E-44248465IPR002913START domain
Gene3DG3DSA:3.30.530.205.7E-6296435IPR023393START-like domain
SuperFamilySSF559615.31E-11486716No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MSNKRQRESY NQNQEFIDNN NSFSIGIMSR DDEIDSTNYT RSGSENQEND QIPISHNNNK  60
RKRYHRHTQF QIQEMEAFFL ECPHPDDKQR KELSRQLGLE PLQIKFWFQN KRTQMKNHND  120
RSENTKLRAE NEKLRSENHR CRQAMANASC PRCGGQTAVA EMSLEEHHLH FENARLRAEI  180
EKITAMAGKY VSNPAMNYPV MSPPIPSRPS QLGLGTFGGA VNVNGGNLLR SVNGVGAVDR  240
PMIINLAVGA MDEFMRMAQV DQPLWVVTGR NETELALNED EYARVYYKGF GPRLAGSRIE  300
ASKGTGVVIM NHVSIVEMLM DVNQWSTMFT GMVSNALTHE VLSSGVPGNI SGTLQLMSAE  360
FHVPSPIVSG RESSFVRYCK QQGDGLWAVV DVSVDSFHSN SQNRCRRRPS GCMIQEMSNG  420
CSKVTWVEHV EVDDNVRSHQ TFQQVISKAL SAKRWVATLE RKCERLASLL STSISSGEMD  480
MITTQGKMGM LNLAERMAIN FFDGVSVSNP HAWSTLQGGG TDDVRVMMRK TVADPGRPPG  540
IVLSAATSLW LPLPPRKIFD FLRNENTRNK VRKTSTVHLI WFLVCTRALW DVLSNGGVMK  600
KIANIPNGRD IRNCVSLLQK ESSNDNGMVI LEEHCTDPTG SFVIYAPVDT SAMRNVLTGG  660
DPDYVALLPS GFSILPDDTA KPAGRAMGEG NGGGSFLTVA FQILVDSLPS SDLTISSIAT  720
ANNLIACTLD GISKSLACET A
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00513
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024046029.10.0homeobox-leucine zipper protein HDG2 isoform X2
RefseqXP_024950958.10.0homeobox-leucine zipper protein HDG2 isoform X2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLV4W4610.0V4W461_9ROSI; Uncharacterized protein
STRINGXP_006469695.10.0(Citrus sinensis)
STRINGXP_006447537.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.30.0homeodomain GLABROUS 2