PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00195
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 277aa    MW: 32873 Da    PI: 8.8716
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00195genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B383.61.8e-2633126185
                 EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                 f+kvltpsdv+k++rlv+ k++ae++           +++  ++++l+++d++ + W ++++y+ +s++yv+tkGW++Fv++++L++gD++ F+++
  AA32G00195  33 FDKVLTPSDVGKLNRLVIHKHHAEKYfpilsdyhntnELQ--NGTMLKFQDKNDKMWMFRYSYWHSSQSYVMTKGWNRFVNDKKLNAGDTISFHRE 126
                 89*****************************999865444..7789***********************************************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-3529141IPR015300DNA-binding pseudobarrel domain
CDDcd100172.47E-2231126No hitNo description
SuperFamilySSF1019361.44E-2731126IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.36533143IPR003340B3 DNA binding domain
SMARTSM010191.5E-1733134IPR003340B3 DNA binding domain
PfamPF023625.7E-2333126IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDILNSTSFD QEQEVKTKEE AKSYNNVVKE HLFDKVLTPS DVGKLNRLVI HKHHAEKYFP  60
ILSDYHNTNE LQNGTMLKFQ DKNDKMWMFR YSYWHSSQSY VMTKGWNRFV NDKKLNAGDT  120
ISFHRETAVK SDNSPKMFID WKYKSNLDLL DNINHHKFSD FNFNFNYPKS RSVFLNDHLP  180
VMDNYMPVPY RRFNQRLRFC EEFSYLEDKW TDPVGILFTP CNKEIPATFS SPPVKKIRLF  240
GVNIEVETRG EFGASSSSSD ERFREYERKG KGKSFEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-41291444113B3 domain-containing transcription factor NGA1
5os9_B5e-41291444113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00195
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018492258.16e-56PREDICTED: B3 domain-containing transcription factor NGA3
TrEMBLA0A0D3C7103e-54A0A0D3C710_BRAOL; Uncharacterized protein
STRINGBo5g002790.15e-55(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136511527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.12e-55B3 family protein