PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00085
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 530aa    MW: 61106.9 Da    PI: 8.1171
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00085genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.62.8e-053493821755
                 HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 N++f+ Lr+++P+          +K +iL  +++Y+++L+
  AA32G00085 349 NEKFSVLRSMVPTvH------EIDKESILNNTIKYLQELE 382
                 9************55......8***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.9E-3721203IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.556332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.58E-5334386No hitNo description
SMARTSM003531.0E-6340387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-8345395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-8347391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048629Biological Processtrichome patterning
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MADSHHHVKE AGSSRRENKL LRKQLAIVVK SIGWNYAIFW SSSPTQPRVL EWGEGCYNGE  60
IKKRKKRTYE LANNYKYGSQ RSKQLRKLYL SMLQGDDTST HDDHSDNNNN NNNNNNNKTK  120
MLSPDDLSDE EWYYLVSILP GRAWETNETT WLCNAQYAHT KLFTRSLLAK TVMCFPYLGG  180
VIELGVTELI SEDHNLLQHI KSCLLETSKP GCLSNYFSAY QENSDEKNHQ MGLKMSEENS  240
MFQENHPTPL TDSSDEDLHY KRTVSTLLRY GGDRLSSKNN KNIHDSAASS FLRWKRFQHP  300
KQSNFQSSQN QNVLQKILHN VPFMHSADKT QMFQTQRFSP NQEHKRKENE KFSVLRSMVP  360
TVHEIDKESI LNNTIKYLQE LEARVEELES CMGSVDFVER QRNTTMSVNE SVLIEETSGN  420
YDDVTKIHGN SVEMEKVMKE QTDLKVKVKE KEVLIEVKCC YRDYIVADIM ETMSNLHMDA  480
FSVRSQTLNG FLTLNLKAKF RGAAVASVGM IKREIKRVVG GECTRITKCS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16165KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTrancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00085
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024010505.10.0transcription factor MYC1
SwissprotQ8W2F10.0BH012_ARATH; Transcription factor MYC1
TrEMBLA0A087GL750.0A0A087GL75_ARAAL; Uncharacterized protein
STRINGA0A087GL760.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117701832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.10.0bHLH family protein