PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00671
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 566aa    MW: 62486.8 Da    PI: 6.3754
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00671genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.9e-08460508348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lvd+v ++G g W+ I +        Rt  ++k++w+++l
       AA31G00671 460 AWTLSEVTKLVDGVSMFGAGKWSEIRKLSFssySYRTSVDLKDKWRNLL 508
                      7************************9999999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.605453512IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-12455514IPR009057Homeodomain-like
SMARTSM007171.2E-8457510IPR001005SANT/Myb domain
SuperFamilySSF466894.56E-15459518IPR009057Homeodomain-like
CDDcd116603.47E-19459509No hitNo description
PfamPF002491.1E-5460508IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MGTVVGSIED CREMFEGSVQ TRTTPFSSTT QIGNPVAYKL VRVAGDGRLV PATDEEILEV  60
NENDMHILSA TGQTVDYIPF EGLASELPRL ESPEGLTLKI ECESNVDRSN KIESCSNAAA  120
SPKDTVSSAA HEKPGSSPKD TASSAADEKP DFSRVRGEIC LENLPIKALQ ETFRATFGRE  180
TNVKDKMWLK RRIAMGLINS CDVPTTIPMI KDNKLFESQD NSNGVTNVVM ADGVRATNPT  240
AVASSPDHIN EHSDARGHSS PGDHFGDQYC RRDEFSSEHN RAAKRVRKPT RRYIEELSET  300
DEKQQNDKST TPSKSQMLSE KSEVRSSSTR MVSLGGSRIQ VPYVSHVRKS RPRENVMALM  360
ECRSSCLEVK SSAAGSNLNL TPSQFNSEVL DQVPEVSSAS VAVQKESFAT CHQDDKEHIL  420
TEVDQDMEPE HIESSGNSSD DNHVSLPITQ GAVRRKHHRA WTLSEVTKLV DGVSMFGAGK  480
WSEIRKLSFS SYSYRTSVDL KDKWRNLLKA SASQSPSNTM GHLKKHGSMH IPMEILIRVR  540
ELAEKQSLVP PVVSKVPEDV NNRGNE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA31G00671
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390637.10.0uncharacterized protein LOC18009454
TrEMBLV4KKV40.0V4KKV4_EUTSA; Uncharacterized protein
STRINGXP_006390637.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.10.0TRF-like 6