PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00519
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 633aa    MW: 72630.3 Da    PI: 5.2091
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00519genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157e-05604624222
                 EETTTTEEESSHHHHHHHHHH CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                 +C +Cg+ F ++s L++H+  
  AA31G00519 604 ECDKCGEEFESRSKLHKHLAE 624
                 5*****************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465652.75E-226114IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1106.4E-23688IPR001623DnaJ domain
SMARTSM002719.7E-211073IPR001623DnaJ domain
PROSITE profilePS5007619.2311181IPR001623DnaJ domain
CDDcd062577.97E-151170IPR001623DnaJ domain
PfamPF002261.0E-191278IPR001623DnaJ domain
PRINTSPR006252.7E-141331IPR001623DnaJ domain
PRINTSPR006252.7E-143146IPR001623DnaJ domain
PRINTSPR006252.7E-145373IPR001623DnaJ domain
PROSITE patternPS0063605877IPR018253DnaJ domain, conserved site
SuperFamilySSF576678.48E-15299351No hitNo description
SMARTSM004511.4E-7306340IPR003604Zinc finger, U1-type
PfamPF121713.5E-10308334IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.82309333IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280311333IPR007087Zinc finger, C2H2
PROSITE profilePS501579.993603632IPR007087Zinc finger, C2H2
SMARTSM003551.9603627IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280605627IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MASSSRAEKR CLYEVLGITK ESSPDEIRSS YRRLALQRHP DKLVKTGGLS EAEATAQFQE  60
LVHAYEVLSD PKERAWYDSH RSQILFADHG SSGGTKKGGM PGGSVPNLFA FFSNTVYSGY  120
SDTGKGFYKV YSELFNSIHL NEIKFANTLG LRIGSVREAP IMGNLESPYA QAMAFYNHWL  180
GFCTVMDFCW VDEYDAMAGP NRKSRRVMEE ENKKLRRKAK REYNDTVRGL AEFVKKRDKR  240
VLDMMVKKIA DVEKKKSEER ERKKKQEQEK LERAMNYEEP DWAKVQDGEE EKIDVLEEDN  300
DDERKNEQLY CIVCSKKFKS EKQWKNHEQS KKHKEKVAEL RETFSDIEEE VSDGSMEQSE  360
NVEELHEEFQ EGLDINNDKE PEENVAKADE TDNEYFPAED DVKESGESED DDDDDDDEMS  420
LLKKMVFGQR NKKTNVLSDK EDEVEDESDS EPVSQNRKSK KKSNKKKPVP LKEKKKGKPA  480
KTMTEDAEIP EEDDDSNTDD NIKKTESTSG ANEDSQKDEA DVVMEYDNRK STGRRRKCKK  540
GKDKKKPESN GNGDMEDSHS ETLENQSESI YIAQEYKKAT TTRSKKSTRG MKSTKGTAKK  600
TSNECDKCGE EFESRSKLHK HLAETGHATV KSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1xbl_A4e-11980268DNAJ
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212220KKLRRKAKR
2533538RRRKCK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA31G00519
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390445.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLV4M9A40.0V4M9A4_EUTSA; Uncharacterized protein
STRINGXP_006390445.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88692230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.10.0DNAJ heat shock N-terminal domain-containing protein