PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00421
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 444aa    MW: 48731.9 Da    PI: 9.9914
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00421genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.51.3e-092851327
                S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                +elCr+f+r G C+yG+ C+F H++
  AA31G00421 28 RELCRNFQR-GSCRYGEGCRFLHPQ 51
                79*******.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.3E-52651IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2812652IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-52850IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-72851IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-72951IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MKKTRLMFTY PRRSNEHTQL KILAVNMREL CRNFQRGSCR YGEGCRFLHP QQTKPNNSSG  60
FGTQQQQKST NPFGFGVQDR SQGSQVAGSN RTNQFQNKWT RPGSTPSGGG SSAQQTGKQT  120
QQTDHKCTDP AGCKRIMQED FKNERPMWKL TCYSHWKYMP CDITDDINYE ELRAIAYEEA  180
KRGTPLQSIV ERERNLQSSK IAEFENFLRN PYRGPATPNQ TPFVAATPSV FPPNGQINPS  240
PAFSGFNQPP NINPGVSSSG PPNPFASFSQ QSNAFSVNTP QHVPSGGFQM QPSTSGTSFI  300
SKPGAFGQGP GSGPGPTNTT PQSNNIFGST SPTPTPQSNS IFGSINPTST PNTSQNNQTT  360
FNLNVANPSQ SIQPAFNLNL PPQSSSTHHL DTTKASSETK VETEAVDSSI WLKEKWTPGE  420
RVSVVFMPPD SGASATRFLL YRIK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA31G00421
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001322472.11e-157Zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ9FWS31e-152C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLA0A1P8AU481e-156A0A1P8AU48_ARATH; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGAT1G75340.11e-150(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107242731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.21e-114C3H family protein