PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00286
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Trihelix
Protein Properties Length: 474aa    MW: 54202.1 Da    PI: 7.1643
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00286genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix37.27.5e-121483887
    trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                m+e g+ r++k+Ckek+en+ k++k++keg+ +++  + +t+++fdqlea
  AA31G00286  1 MAELGYIRNAKKCKEKFENVYKYHKRTKEGRTGKS--DGKTYRFFDQLEA 48
                7899****************************964..5557*******85 PP
2trihelix103.41.7e-32287372187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+k e+ aLi++r++++++++++  k+plWee+s  m++ gf+r++k+Ckekwen+nk++kk+ke++kkr +++s+tcpyf+ql+a
  AA31G00286 287 RWPKVEIEALIKLRTNLDSKYQENGPKGPLWEEISGGMKRLGFNRNSKRCKEKWENINKYFKKVKESNKKR-PQDSKTCPYFHQLDA 372
                 8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.0E-7149No hitNo description
PROSITE profilePS500907.015280344IPR017877Myb-like domain
PfamPF138377.5E-22286373No hitNo description
Gene3DG3DSA:1.10.10.608.5E-4286343IPR009057Homeodomain-like
CDDcd122034.31E-26287351No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MAELGYIRNA KKCKEKFENV YKYHKRTKEG RTGKSDGKTY RFFDQLEALE THHHQQQQQP  60
PQPQPPPLQP QPLLRPHNNN NSLFSTPPPP TNITIPSSSL PLYSNPISFP NISGDFLSDS  120
TSPSSSSSTS SDVEIGGTTT RKKRKRKWKE FFERLMKQVV DKQEELQRKF LEAVEKREHE  180
RMSRDEAWRL QEIARINREH ELLAQERSMA AAKDAAVMSF LQKLSEKPNS LTTTPQPPQP  240
PQPQPQPQQP RLQIQQQTPS PVVVETTKTD NGDENLAASG GGASSSRWPK VEIEALIKLR  300
TNLDSKYQEN GPKGPLWEEI SGGMKRLGFN RNSKRCKEKW ENINKYFKKV KESNKKRPQD  360
SKTCPYFHQL DALYKERNKF HHNNHQNNNN IASSSSNSGH IKPENTVPLM VQPEQQWPPA  420
LTTSQPDPPP QDGDQNFEDE EGTDGEEYED EDEEDEEGGE FELVPSNNNK STVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140145RKKRKR
2140146RKKRKRK
3141146KKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA31G00286
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013693759.10.0trihelix transcription factor GT-2-like
SwissprotQ391171e-121TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A078JF430.0A0A078JF43_BRANA; BnaCnng46430D protein
STRINGBra008285.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-149Trihelix family protein