PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00284
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Trihelix
Protein Properties Length: 463aa    MW: 54450.7 Da    PI: 9.1796
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00284genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.11.9e-121483987
    trihelix 39 rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                +e g++rs+k+Ckek+en+ k++k++keg++ ++se  +t+++f++lea
  AA31G00284  1 MELGYKRSAKKCKEKFENVYKYHKRTKEGRRTGKSEG-KTYRFFEELEA 48
                689*****************************96666.59******985 PP
2trihelix107.31.1e-33295380187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+k ev aLi++r+++e +++++  k+plWee+s  mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr + +s+tcpyf+qlea
  AA31G00284 295 RWPKTEVEALIKIRKNLEANYQENGTKGPLWEEISGGMRRLGYSRSAKRCKEKWENINKYFKKVKESNKKR-PLDSKTCPYFHQLEA 380
                 8*********************************************************************8.9************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-6248No hitNo description
PROSITE profilePS500907.642288352IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.2E-4292351IPR009057Homeodomain-like
SMARTSM007170.0063292354IPR001005SANT/Myb domain
CDDcd122031.75E-24294359No hitNo description
PfamPF138372.5E-23294381No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MELGYKRSAK KCKEKFENVY KYHKRTKEGR RTGKSEGKTY RFFEELEAFD TLNSYNQPHH  60
ESHLMKTPNQ ATTTSLIPWI KHQEQEVSVK PNNTNPNFLN KQPSSTTPFY NNSKPSSNHL  120
MSNVSSLNLF SSSTSSSTDS DEDQEDEKKR SRKRRKYWKG LFTRLTKELL EKQEKMQKKF  180
LETLENREKE RITREEAWRI QELTRINKEH ETLVHERSNS AAKDAAIISF LHKISGQQQQ  240
QQQQPQQNHK LVHKQQNQTD YNIVTFESTK ESSRPVLMDT AMKIGNFNVN HSSSRWPKTE  300
VEALIKIRKN LEANYQENGT KGPLWEEISG GMRRLGYSRS AKRCKEKWEN INKYFKKVKE  360
SNKKRPLDSK TCPYFHQLEA LYNERNKSGA LPLMAVPQRE LLPSQETQIE FEKKEKIDNK  420
EDESDEEDYE EEEEGEGDNE TSEFEIVLNK TSSPMDINNN IFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1513KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA31G00284
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428754.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391170.0TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A178W7Z20.0A0A178W7Z2_ARATH; GT2
STRINGXP_010428754.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-176Trihelix family protein