PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00146
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 314aa    MW: 35722.9 Da    PI: 6.3898
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00146genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.51.4e-14118169155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ +  Lr+l+P++   ++++ + a+i   A++Y+k+L+
  AA31G00146 118 QRMTHIAVERNRRKQMNDYLGVLRSLMPPS---YAQRGDQASIIGGAINYVKELE 169
                 79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.75E-11116173No hitNo description
SuperFamilySSF474592.62E-17116181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.986117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-11118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-14118181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MALEAVVFSS QQDPFSYISS KDNFLFQDFY FQDQESDFKN SIKLSQDQEQ DQELKQDQEL  60
LKGKGEELVR SKNEDYNEED LLVYRSMVNT ENQAQAGGGR RKRRRTRSSK NKEEMENQRM  120
THIAVERNRR KQMNDYLGVL RSLMPPSYAQ RGDQASIIGG AINYVKELEH LLQSMESSKS  180
TKTTTNESDQ TNSSSKVPFS DFFTFPQFST RSSSSAAAEI EVTMVESHAN LKILVKKRPR  240
QLIKLVASIQ SLKLTLLHLN VTTLHLSVLY SISVKVEEGS QLNTVEDIAA AVNQILRRIE  300
EEFSSSSSLS SSFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100104RKRRR
2100105RKRRRT
3118129RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA31G00146
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428088.11e-127PREDICTED: transcription factor bHLH96 isoform X1
RefseqXP_010428089.11e-127PREDICTED: transcription factor bHLH96 isoform X2
SwissprotQ9C7T41e-122BH096_ARATH; Transcription factor bHLH96
TrEMBLR0IFC41e-122R0IFC4_9BRAS; Uncharacterized protein
STRINGXP_010428089.11e-127(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-101bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]