PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA31G00129
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 368aa    MW: 42202 Da    PI: 7.9606
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA31G00129genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000142042123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C++Cg + s k++ ++Hi +H
  AA31G00129 20 YVCQYCGITRSKKYLITSHILSH 42
                9********************96 PP
2zf-C2H220.41.3e-066688123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C+ Cg  F+ + +Lk+H+++H
  AA31G00129 66 HTCEECGAEFRKPAHLKQHMQSH 88
                79*******************99 PP
3zf-C2H219.13.7e-0694118123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++C   dC++s++rk++L+rH+ tH
  AA31G00129  94 FTCYvdDCTTSYRRKDHLNRHLLTH 118
                 899999*****************99 PP
4zf-C2H220.71.1e-06170194123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++C+   Cgk F+++s Lk H+ +H
  AA31G00129 170 HVCKeiGCGKAFKHPSRLKAHQDSH 194
                 79********************998 PP
5zf-C2H216.52.4e-05261286123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 +kC    C+ +Fs  snL++H +  H
  AA31G00129 261 FKCDfeGCSCTFSKASNLQKHVKAvH 286
                 89*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355122042IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.176693IPR007087Zinc finger, C2H2
SMARTSM003550.0016688IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-56685IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SuperFamilySSF576674.99E-1175127No hitNo description
Gene3DG3DSA:3.30.160.605.6E-1286120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.72394123IPR007087Zinc finger, C2H2
SMARTSM003550.1194118IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096118IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.3E-4121150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.099123153IPR007087Zinc finger, C2H2
SMARTSM003552.8123148IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280125148IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-9163194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.44E-6166196No hitNo description
PROSITE profilePS5015710.699170199IPR007087Zinc finger, C2H2
SMARTSM003550.0064170194IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280172194IPR007087Zinc finger, C2H2
SMARTSM003554.3202227IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280204227IPR007087Zinc finger, C2H2
SMARTSM0035525230251IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.33E-9243299No hitNo description
PROSITE profilePS5015712.383261291IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.1E-7261286IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0015261286IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280263286IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.1E-4287312IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035513292318IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280294318IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MAEEVNGDVD SYMIKDIRKY VCQYCGITRS KKYLITSHIL SHHKMEIEEE IDNEASEVEE  60
EVSCKHTCEE CGAEFRKPAH LKQHMQSHSL ERPFTCYVDD CTTSYRRKDH LNRHLLTHKG  120
KLFKCPVENC KSEFSVQGNV GKHVKLFHSN GDKVNENAQP LEKENDQKQH VCKEIGCGKA  180
FKHPSRLKAH QDSHVKLDSI EAFCSEPGCM KYFTNDACLK AHIRSCHQHV NCEICGSKHL  240
KKNIKRHLRT HDVNDSAPGV FKCDFEGCSC TFSKASNLQK HVKAVHEDIR PFICGFAGCG  300
MRFAYKHVRD KHENSGCHVY TCGDFIETDE VFTSRPRGGV KRKQVTAEML IRKRVMPPQL  360
DSEEQNTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-157022219155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-157022219155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA31G00129
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301795.10.0transcription factor IIIA
SwissprotQ84MZ40.0TF3A_ARATH; Transcription factor IIIA
TrEMBLR0IDC60.0R0IDC6_9BRAS; Uncharacterized protein
STRINGBostr.10273s0148.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.20.0transcription factor IIIA