PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA30G00250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 80aa MW: 9296.98 Da PI: 10.5115 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.5 | 1.2e-25 | 10 | 57 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ie+k++r++ fskR+ng+lKKA+ELSvLCd+ a+iifs++gkly y AA30G00250 10 AIEDKTQRNIAFSKRKNGLLKKAYELSVLCDVHLAIIIFSPSGKLYLY 57 59********************************************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-31 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.67 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.79E-28 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-24 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
MGRKKIEMRA IEDKTQRNIA FSKRKNGLLK KAYELSVLCD VHLAIIIFSP SGKLYLYDSK 60 SRIEDIVRMY LDTPRHIRGG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-18 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_B | 2e-18 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_C | 2e-18 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_D | 2e-18 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_A | 2e-18 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_B | 2e-18 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_C | 2e-18 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_D | 2e-18 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA30G00250 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006411890.2 | 2e-32 | truncated transcription factor CAULIFLOWER D | ||||
Swissprot | Q9LM46 | 2e-25 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | V4MKU5 | 7e-32 | V4MKU5_EUTSA; Uncharacterized protein | ||||
STRING | XP_006411890.1 | 1e-32 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 9e-28 | AGAMOUS-like 104 |
Publications ? help Back to Top | |||
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