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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA30G00112 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | bZIP | ||||||||
Protein Properties | Length: 251aa MW: 27880.7 Da PI: 10.2534 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 22.6 | 2.3e-07 | 222 | 243 | 5 | 26 |
CHHHCHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKka 26 +r +r++kNRe+A rsR+RK++ AA30G00112 222 RRHKRMIKNRESAARSRARKQE 243 699*****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 5.4E-5 | 222 | 244 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 225 | 240 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MLSSTELQVN HKISDSNKNN TLNRVSSISP SSSSSSSSSS SSTSSSSSSP LLKSQDCQIQ 60 NNRSLNTMEE VWKDINLASL HHLNRNTQHP QHIHDPRFRS HHQNQNPNSI FQDFLNRPLN 120 HEIPTSLSMA SASNGDTSTV TALYTAPIPP PATVLSLNSG AGFEFLDNPD PLVTPNSHLQ 180 SQRHLSNVSS FDTPFEALVT YARLGCFSKK RGQDSDESSG NRRHKRMIKN RESAARSRAR 240 KQECLYKRVR A |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA30G00112 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010437402.1 | 1e-103 | PREDICTED: protein FD-like isoform X1 | ||||
Swissprot | Q84JK2 | 1e-92 | FD_ARATH; Protein FD | ||||
TrEMBL | A0A1J3HBH2 | 1e-102 | A0A1J3HBH2_NOCCA; Protein FD (Fragment) | ||||
TrEMBL | A0A1J3J4V9 | 1e-102 | A0A1J3J4V9_NOCCA; Protein FD (Fragment) | ||||
STRING | XP_010437402.1 | 1e-102 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 1e-92 | bZIP family protein |