PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA2G00082
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 373aa    MW: 43025 Da    PI: 9.6105
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA2G00082genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.24.7e-1641133198
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                ff +l+ s++l+++rl++p kf+++++ +   s+ + l+ ++g  +W+v l  rk ++++++++GW++Fv+   +k g +++F+++g+s f  +v +f+
  AA2G00082  41 FFHKLILSSTLQEKRLRVPDKFVSKYKDE--LSVAVALTVPDGhHVWRVGL--RKADDKIWFQDGWQHFVDRYFIKIGFILIFRYEGNSAF--TVYIFN 133
                8899999*******************855..99**********99******..**********************************9999..888875 PP
2B352.77.7e-17276369199
                EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                f  vl ps+  + ++++lp  fae++ +g++ +   ++  ++  ++W v++    k gr  +++GW eF  +n++ egD++vF+l ++++f l+v++fr 
  AA2G00082 276 FRVVLRPSYLYRGCIMYLPSGFAEKYlSGIS-GF--IK-LQLAEKQWPVRC--LYKAGRAKFSQGWYEFTLENNIGEGDVCVFELLRTRDFVLKVTAFRV 369
                677899********************84443.43..44.34677*******..666666779************************99*******99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-2036134IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-2138134IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.94341135IPR003340B3 DNA binding domain
CDDcd100178.31E-1641133No hitNo description
PfamPF023623.7E-1341133IPR003340B3 DNA binding domain
SMARTSM010198.7E-1442135IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-23268369IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-22269370IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-19274368No hitNo description
PROSITE profilePS5086312.576276370IPR003340B3 DNA binding domain
PfamPF023622.4E-15276369IPR003340B3 DNA binding domain
SMARTSM010193.0E-21276370IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
FKISGYASDS PASFHDLTCP YFWSLLFLSL IYFGLSMPRP FFHKLILSST LQEKRLRVPD  60
KFVSKYKDEL SVAVALTVPD GHHVWRVGLR KADDKIWFQD GWQHFVDRYF IKIGFILIFR  120
YEGNSAFTVY IFNLSHSEIN YNNSTMDPQN QFKRARLFED LEDGESTEVI YPSNSYPIPD  180
SNNPPATKGY GSSTIQSLFT GSKAEETPKK VLKKRGRKKK NPDPEEVNSL TPRGEDSENR  240
SKFYESASAR KRTVTAAERE RAINAAKTFE PTNPFFRVVL RPSYLYRGCI MYLPSGFAEK  300
YLSGISGFIK LQLAEKQWPV RCLYKAGRAK FSQGWYEFTL ENNIGEGDVC VFELLRTRDF  360
VLKVTAFRVN EYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-8924237315146B3 domain-containing transcription factor VRN1
4i1k_B2e-8924237315146B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA2G00082
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010532431.10.0PREDICTED: B3 domain-containing transcription factor VRN1 isoform X2
SwissprotQ8L3W10.0VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A1J3JGF90.0A0A1J3JGF9_NOCCA; B3 domain-containing transcription factor VRN1
STRINGXP_010532431.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112428103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]