PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA27G00055
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 303aa    MW: 33087.4 Da    PI: 6.4036
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA27G00055genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.7e-09219260955
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  ++RR+ri +++  L+el+P+      +K++ +++LekA+ Y+k Lq
  AA27G00055 219 AKNRRERISERLKVLQELVPNG-----TKVDLVTMLEKAIGYVKFLQ 260
                 69******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.4E-12210268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.983210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-11212264No hitNo description
SuperFamilySSF474594.32E-13212269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-11216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-6219260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MPLVNDQSDE PNYISTPNSS SDLSSPENHT EATYTGGGGG GREGASVSSS STLNSDHHQQ  60
HNQEFVFYPS NETIDDQDHN SLMDFNGSFL NFDHQKSFIP PSIDGNMSSY GYNNTSWMDS  120
INISPRLIKT PNCFETTTNF GLTTPKPATN HANGDWLYSD STVVTTGLRY ETTSPKSAGN  180
KRPFTGGSSQ ATKKLSTSNG KAKPKATTTS PKDPQSLAAK NRRERISERL KVLQELVPNG  240
TKVDLVTMLE KAIGYVKFLQ LQVKVLAADE FWPVQGGKAP DISQVKDAID AILSTTQRER  300
NSN
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA27G00055
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_198596.11e-133RHD SIX-LIKE 1
SwissprotQ9FJ001e-134BH086_ARATH; Putative transcription factor bHLH086
TrEMBLA0A1J3DLI01e-133A0A1J3DLI0_NOCCA; Uncharacterized protein
STRINGAT5G37800.11e-133(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42602854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.11e-117RHD SIX-LIKE 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Kim CM,Dolan L
    ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon.
    PLoS Genet., 2016. 12(8): p. e1006211
    [PMID:27494519]
  3. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]