PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

CO-like

Protein Properties

Length: 338aa MW: 38280 Da PI: 5.8329

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA26G00822	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.5	2.8e-08	3	45	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 ++C+++ ++ ++C++++ lC +C +++H+ Ht+ AA26G00822 3 VPMCDHCVTAPAVIYCKSDSAKLCLTCDVHIHSAnplshrHTR 45 689****************************966888855655 PP
2	CCT	56.9	7.5e-20	292	335	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRY+eK+ +R F K+irY+sRKa+A++R+RvKGrFvk+ AA26G00822 292 RIRAKLRYNEKKLKRSFGKQIRYASRKARADTRKRVKGRFVKAG 335 445669***********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.115	1	48	IPR000315	B-box-type zinc finger
SMART	SM00336	1.8E-12	1	48	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.9E-6	2	45	IPR000315	B-box-type zinc finger
CDD	cd00021	9.53E-6	4	48	No hit	No description
PROSITE profile	PS51017	13.801	292	334	IPR010402	CCT domain
Pfam	PF06203	2.0E-14	293	334	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MEVPMCDHCV TAPAVIYCKS DSAKLCLTCD VHIHSANPLS HRHTRSLICE KCFSQPGVIR 60 CVDENVSHCQ GCHWHASNCS VLGHKIQTLE HFSGCPSQVD LIKLWSSNLE LLVPFNDKSI 120 MDQIESNNTL FETLEISGCT DNLDDQSSHF SPESIEASCP DSLLKLEDDE DLHELNLDYA 180 SLNFDVGDDF MKCLSPQDHV ESSHSENVVQ DHLFVDMNAS VNKTGFIPSS PLSPDLFGQV 240 NQNMSFSISN MTCESRAVDY EYEYRDCGVS PSFVMCDSPW ETNLKENYRQ ARIRAKLRYN 300 EKKLKRSFGK QIRYASRKAR ADTRKRVKGR FVKAGDYI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA26G00822

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006406230.2	1e-126	zinc finger protein CONSTANS-LIKE 12
Swissprot	Q9LJ44	1e-118	COL12_ARATH; Zinc finger protein CONSTANS-LIKE 12
TrEMBL	V4M5W2	1e-124	V4M5W2_EUTSA; Uncharacterized protein
STRING	XP_006406230.1	1e-125	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5319	22	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	1e-111	B-box type zinc finger protein with CCT domain

Publications ? help Back to Top
Ordoñez-Herrera N, et al. The Transcription Factor COL12 Is a Substrate of the COP1/SPA E3 Ligase and Regulates Flowering Time and Plant Architecture. Plant Physiol., 2018. 176(2): p. 1327-1340 [PMID:29187570]