PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA26G00784

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bHLH

Protein Properties

Length: 359aa MW: 40003 Da PI: 5.6966

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA26G00784	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.4	1.3e-08	266	307	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + r+RR+ri +++ L++l+P +K++ a++L +A +Y+k L AA26G00784 266 AARQRRERISEKIRVLQTLVPGG-----TKMDTASMLDEAANYLKFL 307 67*****************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.167	258	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-13	263	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-13	264	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.18E-11	264	312	No hit	No description
Pfam	PF00010	7.0E-6	266	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.7E-12	267	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MEGLESVYAQ AVYGISRENK IMEHQVSLMG PISDSKPGSD LIWGGNELMS RELCSSHLIN 60 PTLTSFMSDL GVISQMQQQI GINATSLDPS LDCLLSATNS NNTSTTSMED DGISVLFSDC 120 QTLWNFNGVS SAESENREIT EPIKPKSLKR NRGRDETESH HFRLVSPQDD ESLGNFKLIY 180 DENPSKLKKL RSEKPQGGSS NISFQNPNTN STSLSGEIEP DAEAIAQMKE MIYRAAAFRP 240 VNFGVEIVEK PKRKNVKIST DPQTIAARQR RERISEKIRV LQTLVPGGTK MDTASMLDEA 300 ANYLKFLRSQ VKALENLRPK FDPTNLNFSS SSPLFHPFFP PIQNPNQIHH SETLNPLID

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MEGLESVYAQ AVYGISRENK IMEHQVSLMG PISDSKPGSD LIWGGNELMS RELCSSHLIN  60
PTLTSFMSDL GVISQMQQQI GINATSLDPS LDCLLSATNS NNTSTTSMED DGISVLFSDC  120
QTLWNFNGVS SAESENREIT EPIKPKSLKR NRGRDETESH HFRLVSPQDD ESLGNFKLIY  180
DENPSKLKKL RSEKPQGGSS NISFQNPNTN STSLSGEIEP DAEAIAQMKE MIYRAAAFRP  240
VNFGVEIVEK PKRKNVKIST DPQTIAARQR RERISEKIRV LQTLVPGGTK MDTASMLDEA  300
ANYLKFLRSQ VKALENLRPK FDPTNLNFSS SSPLFHPFFP PIQNPNQIHH SETLNPLID

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	267	272	RQRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA26G00784

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006406283.1	0.0	transcription factor bHLH87
Swissprot	Q8S3D2	1e-176	BH087_ARATH; Transcription factor bHLH87
TrEMBL	V4NMP9	1e-180	V4NMP9_EUTSA; Uncharacterized protein
STRING	XP_006406283.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7960	26	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	1e-162	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]