PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA26G00777

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Dof

Protein Properties

Length: 186aa MW: 20096.3 Da PI: 8.9174

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA26G00777	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.4e-39	33	93	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGGalrnvP+Gg++rkn k+s AA26G00777 33 QQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPIGGASRKNSKRS 93 6789*****************************************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-26	23	84	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.3E-33	35	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.068	37	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MEDPSSVAVA AAAASAYYYE TMMAKQQFPI PDQQEQLKCP RCDSPNTKFC YYNNYNLSQP 60 RHFCKSCRRY WTKGGALRNV PIGGASRKNS KRSSGSSTTS SSSNKKTKNQ DPVPVLTTKP 120 ESSPNRVLYG FSMGEQDLKG IESGSFSSLL ASNMQLGLGV GGIFLNGSGW DSGLDLGNEG 180 GYEQSG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA26G00777

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB017564	8e-55	AB017564.1 Arabidopsis thaliana adof1 mRNA for dof zinc finger protein, complete cds.
GenBank	AC025294	8e-55	AC025294.14 Arabidopsis thaliana chromosome 1 BAC F19C24 genomic sequence, complete sequence.
GenBank	AK229106	8e-55	AK229106.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-39-C17.
GenBank	BT025772	8e-55	BT025772.1 Arabidopsis thaliana At1g51700 mRNA, complete cds.
GenBank	CP002684	8e-55	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018459586.1	7e-71	PREDICTED: dof zinc finger protein DOF3.1-like
Swissprot	Q94AR6	2e-61	DOF31_ARATH; Dof zinc finger protein DOF3.1
TrEMBL	V4LBD4	4e-69	V4LBD4_EUTSA; Uncharacterized protein
STRING	XP_006406292.1	6e-70	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21270.1	5e-52	DOF zinc finger protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]