PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00754
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NF-YA
Protein Properties Length: 311aa    MW: 34342.8 Da    PI: 8.8335
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00754genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA106.13e-33166222158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +ksrkpylheSRh+hA+rRpRg+gGrF
  AA26G00754 166 QEPVYVNAKQYQAILRRRQARAKAELEKKL-IKSRKPYLHESRHQHAMRRPRGTGGRF 222
                 69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.5E-37164225IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.414165225IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.2E-28167222IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.7E-24168190IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860170190IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.7E-24199222IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MHSKCDGGNQ IDGDVHRVSS SSVTSSNPWR RAVSCDANSS KSTAVENQIT WESNDSISPS  60
SYTGVNRDDN VTKESQVTAS PQSGAFPWLL TGDCSDKNQE LLNLSSTIPT QPPQPQLVGH  120
TVGWASSNPY QDPYFAGMMG AYGPMGFVPY GAMPHTRMPL PPEMTQEPVY VNAKQYQAIL  180
RRRQARAKAE LEKKLIKSRK PYLHESRHQH AMRRPRGTGG RFAKKTNTET SQLRAEEKSN  240
GSLIQSPTSS SSDQAEAWNS SLGQDEQGGD NVEYRSHQNS AYKRRDEVDC SGQQWNSIAS  300
NHPSQARLAI K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A4e-18165222159HAPB protein
4g92_A4e-18165222159HAPB protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA26G00754
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406333.11e-142nuclear transcription factor Y subunit A-9
SwissprotQ945M91e-141NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLV4NMV51e-141V4NMV5_EUTSA; Uncharacterized protein
STRINGBostr.19424s0556.1.p1e-143(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132681829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.11e-135nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]