PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA26G00731

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bHLH

Protein Properties

Length: 451aa MW: 48878.3 Da PI: 6.2248

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA26G00731	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.5	3.3e-05	363	397	15	54
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ ++++ L++l+ + +K + a++L +A+eYIk L AA26G00731 363 KMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 397 677999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.03	348	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.13E-4	358	402	No hit	No description
SuperFamily	SSF47459	2.09E-9	361	403	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-9	362	405	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MLSIIEAETT TKLTMGDHEL GNTGSGSSWW KLSSSSSSSS SSSTSALAAC NNTLGAFTWA 60 STETLPDKKQ HRSSNSIDSG ASTVFHDHHL QMIGLGLSSQ SPVIDQWNHQ SLLRGDSKAE 120 TSFGLMLQEN LNLDANVNAN ANNTTSSSYQ LQQESGSSSH HQALWRDSSN RGFFLDHHHQ 180 QFSPHGSSSD SSTVTCQGFG VDNSSNTLYA TNSSSTMFNQ IDQRNQQSPL VYSQYGSSSG 240 NYDQIQMSPA TAATAMPSTW FLRSSPPPKP HSPLRFSNNG TFWNPAATGS NAGPHDVSSN 300 FFPTLQPPQI HAPSFDEQPK GISEIRDSSS GEGKRGGGEQ PAAKRAKSET VSPSPSFKVK 360 KEKMGDRIAA LQQLVSPFGK TDAASVLSEA IEYIKFLHQQ VSNEHERDLE VVEEEDLRSR 420 GLCLVPVSST FPMTHDTTVD FWTPTFGGTF R

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MLSIIEAETT TKLTMGDHEL GNTGSGSSWW KLSSSSSSSS SSSTSALAAC NNTLGAFTWA  60
STETLPDKKQ HRSSNSIDSG ASTVFHDHHL QMIGLGLSSQ SPVIDQWNHQ SLLRGDSKAE  120
TSFGLMLQEN LNLDANVNAN ANNTTSSSYQ LQQESGSSSH HQALWRDSSN RGFFLDHHHQ  180
QFSPHGSSSD SSTVTCQGFG VDNSSNTLYA TNSSSTMFNQ IDQRNQQSPL VYSQYGSSSG  240
NYDQIQMSPA TAATAMPSTW FLRSSPPPKP HSPLRFSNNG TFWNPAATGS NAGPHDVSSN  300
FFPTLQPPQI HAPSFDEQPK GISEIRDSSS GEGKRGGGEQ PAAKRAKSET VSPSPSFKVK  360
KEKMGDRIAA LQQLVSPFGK TDAASVLSEA IEYIKFLHQQ VSNEHERDLE VVEEEDLRSR  420
GLCLVPVSST FPMTHDTTVD FWTPTFGGTF R

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA26G00731

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013614574.1	0.0	PREDICTED: transcription factor bHLH123-like isoform X1
Swissprot	Q8GXT3	1e-167	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A3P5Z7X7	0.0	A0A3P5Z7X7_BRACM; Uncharacterized protein
STRING	Bostr.19424s0583.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4024	25	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-138	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]