PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00658
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family M-type_MADS
Protein Properties Length: 253aa    MW: 29190.5 Da    PI: 6.2698
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00658genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.71.3e-1216471950
                HHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF 19 gilKKAeELSvLCdaevaviifsstgklyeys 50
                +  KKA+ELS+LC++ev++i ++ +g+++ y+
  AA26G00658 16 TATKKAKELSTLCGIEVCMISYGVNGEMKIYP 47
                667**************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.25150IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-11479IPR002100Transcription factor, MADS-box
PfamPF003192.1E-71844IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MTKTKRKSSE ELKEETATKK AKELSTLCGI EVCMISYGVN GEMKIYPEDQ QRVAAMASRF  60
MKLTEASRNK KSTSLDHVLK DIQSQKTTAK KQKKEQKVVD VDPNLGSQFD SYSIDEVKGK  120
LESVRRKIQA IIEWRENMNN INYGNSDPVE SIANLGFQIT KKIDYGNMAS SSPSFPRNLG  180
FESNNNKSNN IFRREDFEDI EEDDEFNLPP DFGFIDLKEV DYMLRDDHNL ESTAFDQHNN  240
NNDRRYSNSK HHH
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA26G00658
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.16e-14AGAMOUS-like 103