PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00631
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 339aa    MW: 37791.1 Da    PI: 7.1997
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00631genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.5e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++W +eE+  l+ +v ++G+g W+tI +          R+  ++k++w++
       AA26G00631  5 KQKWNQEEESALKAGVVKHGPGKWRTILKDAEfsgvlYLRSNVDLKDKWRN 55
                     79***********************************88***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.934158IPR017930Myb domain
SuperFamilySSF466893.43E-14270IPR009057Homeodomain-like
SMARTSM007171.1E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-13456IPR009057Homeodomain-like
PfamPF002492.9E-8555IPR001005SANT/Myb domain
CDDcd116605.75E-17656No hitNo description
SMARTSM005263.6E-7115197IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150415.602134202IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.105.1E-10139194IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.16E-10139194IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005389.0E-6140194IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGAPKQKWNQ EEESALKAGV VKHGPGKWRT ILKDAEFSGV LYLRSNVDLK DKWRNMSVMA  60
NGWGSREKSR SSAAVKKTIS LPKQEDNSLA ITMQSDEEIV DAYPISTIES SAPQAVSTPT  120
FQRPNMRLVI CFYVCLLLNN LIMEAITTLK EPGGSNKTAI GAFIEEHFHA PPDFKRLLSE  180
KLKYLTTCGQ LIKVIHYVHI TARLVLLYAW HSRIVSVLQA KHKYRIPNST LSQDKNRNLE  240
NIDVTQRFSS VPSPKPDREE EVNIVSRSEI DQELDNIKIM NLEKAAEEAA QAVAEAEVAI  300
AEAEQAAKEA EVAEADAEAA QAFAEAAMKT LKGRNNFKV
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA26G00631
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556012.11e-116PREDICTED: telomere repeat-binding factor 1-like
SwissprotQ8VWK41e-108TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLR0GJQ01e-112R0GJQ0_9BRAS; Uncharacterized protein
STRINGXP_010556012.11e-116(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87222539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-107telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]