PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA26G00618

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bHLH

Protein Properties

Length: 261aa MW: 28485.9 Da PI: 6.2453

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA26G00618	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14	9.6e-05	148	187	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq AA26G00618 148 VRKEKLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 187 67788899*******999.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.204	137	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.88E-4	147	191	No hit	No description
SuperFamily	SSF47459	2.88E-11	147	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-7	147	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MGDTVEDHDA VEAAGSTTFS ELLMLSDGVF TSSDHRVEIN DYVGGENDVG FVFSNGSRML 60 CFSGGNQNDD EPFFLEPSDS FRDSFSPSLP SCIVNNSSDI CAVDKVSRPN MKKKRTGLGD 120 GQNRDCNRKP GKKCKRNQDK SLVGNSKVRK EKLGERIAAL QQLVSPYGKT DAASVLHEAM 180 GYIKFLQDQI QVLCSPYLIQ NSLVGEVTGE VKPGKKERDL RSRGLCLVPV SSTLHVDNSN 240 GADFWSPAMS HPPSPLPSQH Q

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA26G00618

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013584378.1	1e-111	PREDICTED: transcription factor bHLH113 isoform X1
Swissprot	Q9LT67	1e-112	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A1J3JN38	1e-111	A0A1J3JN38_NOCCA; Uncharacterized protein (Fragment)
STRING	Bo5g114070.1	1e-111	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7402	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	1e-109	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]