PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA26G00592

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Protein Properties

Length: 295aa MW: 34076.4 Da PI: 5.667

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA26G00592	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.5	7.7e-16	159	248	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k +++s+v+ +l lp +f++ h ++k+ + ++tl de+ +++ k+ +k++ l++GW++F+ +++L +gD +vF+l ++f +v ++r AA26G00592 159 FIKSMLQSHVTGGFWLGLPLHFCKIH-LPKH-DEMITLIDEEDEEFVTKYLSEKNG----LSGGWRGFAMDHHLVDGDAIVFHLLTPTTF--KVYIIR 248 89*******************655.5554.459***********656665....*********************8765555..777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.1E-19	150	248	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.94E-24	152	248	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.86E-25	157	248	No hit	No description
PROSITE profile	PS50863	11.265	159	250	IPR003340	B3 DNA binding domain
SMART	SM01019	6.5E-20	159	250	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-13	159	248	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MVESELSYEQ IRLKRVEENK KRMEELNLNK LAQSLRVSSS SPKPSPVSFF FLFSLLFNIF 60 TGFHGNAGQT KDTTLPGELL GGQKVKPCEE SSSELQRELF NHFLYSYLQP GLDPLERPRR 120 SYQRRDLLNR IYASDEARMY AIEKAEQIQS SLDSDFPSFI KSMLQSHVTG GFWLGLPLHF 180 CKIHLPKHDE MITLIDEEDE EFVTKYLSEK NGLSGGWRGF AMDHHLVDGD AIVFHLLTPT 240 TFKVYIIRVY EEDGKNRDGN EDKENETESN EKEEENVSEV RELRSSGKRK RGGRI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA26G00592

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010507495.1	1e-118	PREDICTED: B3 domain-containing protein At3g19184-like
Swissprot	Q1G3M3	1e-101	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	V4JPP5	1e-116	V4JPP5_EUTSA; Uncharacterized protein
STRING	Bostr.19424s0744.1.p	1e-125	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-71	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]