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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA26G00481 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | MYB | ||||||||
Protein Properties | Length: 768aa MW: 87209.1 Da PI: 4.7033 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.4 | 3.3e-08 | 477 | 521 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+ Ed++l+ +++q ++W Ia +g++Rt+ qc r+q AA26G00481 477 SPWTAAEDKKLLLVIHQKNFEDWLDIALSLGTNRTPFQCLARYQR 521 58*****************************************96 PP | |||||||
2 | Myb_DNA-binding | 46.9 | 6.3e-15 | 529 | 575 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r WT+eEd++l av ++G ++W ++a+ + gRt+ qc +rw k l AA26G00481 529 RREWTAEEDDQLRAAVDLYGEKDWQSVANALV-GRTGTQCSNRWKKTL 575 678*****************************.***********9975 PP | |||||||
3 | Myb_DNA-binding | 47.7 | 3.7e-15 | 583 | 626 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 grW+ +Ed++ + av+++G ++W +Ia+ ++ gRt+ qc++rw + AA26G00481 583 GRWSSDEDKRMKVAVTLFGAKNWYKIAQFVP-GRTPPQCRERWVN 626 8******************************.***********87 PP | |||||||
4 | Myb_DNA-binding | 45.4 | 1.9e-14 | 634 | 679 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+WT eEd l +a+ ++G +W+++a+ ++ Rt++qc r+ k+ AA26G00481 634 RGPWTNEEDTMLREAISEHGYSSWSKVASQIP-SRTDNQCWRRYKKL 679 89******************************.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.842 | 374 | 466 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.95 | 378 | 472 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-8 | 381 | 397 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-8 | 443 | 477 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.32E-14 | 452 | 523 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.13 | 471 | 523 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.6E-7 | 475 | 525 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-7 | 477 | 521 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-8 | 478 | 524 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.8E-19 | 508 | 581 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.661 | 524 | 579 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-17 | 525 | 580 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-15 | 528 | 577 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-13 | 529 | 574 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.18E-12 | 531 | 575 | No hit | No description |
PROSITE profile | PS51294 | 11.736 | 580 | 628 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-11 | 581 | 630 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-21 | 583 | 633 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-12 | 583 | 626 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.22E-10 | 584 | 628 | No hit | No description |
SuperFamily | SSF46689 | 8.99E-27 | 608 | 683 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.685 | 629 | 684 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-11 | 633 | 682 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-19 | 634 | 679 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.0E-14 | 634 | 679 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.10E-11 | 636 | 679 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 768 aa Download sequence Send to blast |
MNRDGLYEAD DDDDVEDEED DGIGEDLEDI RRACMVTESN SDENTARNGD LGECVGGEEN 60 QTGSVGVNEG DGEGIPSDSD NEGDMEMLRS IKDRLALSTD VCDVSPMGLG IPLDSESEDD 120 MEMLRSIKSR LALSMDEFRP SMGLSEEDDD DNDAFETLRA IRRRFSAYEN FDPEGNFTDD 180 SPGKKKQVLA SDNETSSEIL SRSNTCESFP DQGKRIASVP DSEEAQAGHS VDRHENTAIV 240 PFGQLETCQS SLVPAASSSF PESAQAFVEA IRRNRAYQRF LRRKMTEIEA TIEQNEKHKK 300 NVKILKEFQA SCKKITKQAL SQKKDPRLEL ISTQKSGPSD DSTEGNDKKI SPLTFGPLEN 360 PRVANYRMAL EKNPLSVDRR NWSAEENENL AKGLKQQVQE ALLFEAMDQS SGIEGYTDDL 420 DSVLETIKNL EITPEMIRQF LPKVSWDQLA SMYVKDRSAA ECESRWMSCE DPLVNHSPWT 480 AAEDKKLLLV IHQKNFEDWL DIALSLGTNR TPFQCLARYQ RSLNAGFLRR EWTAEEDDQL 540 RAAVDLYGEK DWQSVANALV GRTGTQCSNR WKKTLHPTRK KVGRWSSDED KRMKVAVTLF 600 GAKNWYKIAQ FVPGRTPPQC RERWVNSLDP EVNRGPWTNE EDTMLREAIS EHGYSSWSKV 660 ASQIPSRTDN QCWRRYKKLY PHQLPLLQEA RKLRRESVVG NFVDRESERP ALGLNEFLAL 720 PAITLEPEPE VLALTCKTKS RLSKWCSCYK EATKEKEKTN REMFKKCR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-30 | 446 | 676 | 8 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-30 | 446 | 676 | 8 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA26G00481 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024015327.1 | 0.0 | myb-like protein L isoform X2 | ||||
TrEMBL | D7L7Z6 | 0.0 | D7L7Z6_ARALL; MYB4R1 | ||||
STRING | Bostr.19424s0860.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6504 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 0.0 | myb domain protein 4r1 |