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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA26G00386 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | CAMTA | ||||||||
Protein Properties | Length: 899aa MW: 101560 Da PI: 7.4949 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 164.5 | 1.8e-51 | 31 | 146 | 3 | 118 |
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 + k+rwl+++ei+aiL n +++++ ++ + p+sg++iL++rk++r+frkDG++wkkkkdg+tv+E+he+LKvg+ e +++yYah+e+nptf rrcywl AA26G00386 31 EAKSRWLRPNEIHAILSNPKHFTINVKPVNLPNSGRIILFDRKMLRNFRKDGHNWKKKKDGRTVKEAHEHLKVGNEERIHVYYAHGEDNPTFVRRCYWL 129 459************************************************************************************************ PP CG-1 102 Leeelekivlvhylevk 118 L++++e+ivlvhy+e++ AA26G00386 130 LDKTKEHIVLVHYRETQ 146 **************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 75.254 | 25 | 151 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.7E-78 | 28 | 146 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 8.5E-46 | 31 | 144 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 3.5E-14 | 364 | 449 | IPR014756 | Immunoglobulin E-set |
Pfam | PF12796 | 2.5E-6 | 551 | 629 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.08E-15 | 557 | 659 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 3.4E-16 | 558 | 662 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 8.08E-17 | 558 | 667 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.486 | 567 | 632 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.915 | 600 | 632 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1.9E-5 | 600 | 629 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50096 | 6.632 | 748 | 772 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 38 | 763 | 785 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0031 | 786 | 808 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 10.383 | 787 | 811 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 18 | 868 | 890 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.675 | 869 | 898 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 899 aa Download sequence Send to blast |
MDGDGSLGLI GSEIHGFHTM KDLDIQTTLE EAKSRWLRPN EIHAILSNPK HFTINVKPVN 60 LPNSGRIILF DRKMLRNFRK DGHNWKKKKD GRTVKEAHEH LKVGNEERIH VYYAHGEDNP 120 TFVRRCYWLL DKTKEHIVLV HYRETQEAAL VTPGNSNSSH HSPPYLMAED IDFSTGNSDY 180 LGEKGSLGDL VCNDSPDDQN HEIRLHEINT LDWNELLLPT EFTNQSAPIV DDMSYFTEQV 240 HNSKHGSAEH GNHIIGYNTP ANPPSLNGLG DSGYLSNIQY DLGGLSQFGQ KMDSSVKAAD 300 ESLDALLNYS RQSEESSERS MNSFISDSTG SLKDPSLKAM VTSKQDPPAV FHPHSNIAEQ 360 VFSITEVSPA WAYSSEETKI LVTGFLHDSY QHLGTSNLLC VCGDSCVPAE YVQLGVYRCF 420 IPPHSPGVVN LYLSADGHSP ISQCFSFEHR SVPAPAKVSP ENDQTCKWEE FELQVRLAHL 480 LFTSSNKLNV LSSKVSPSNL REAKKLANKT SHLLNSWAYL IKAIQANKLS FDQAKDHLFE 540 LTLKNRLKEW LMEKVLEGHN TLDYDSNGLG VIHLCAILDY TWSIQLFSLS GLSLNFRDKH 600 GWTALHWAAY YGREKMVAAL LSAGARANLV TDPTKENVGG CTAADLAQQN GYDGLAAYLA 660 EKCLIAQFMD MKIAGNITGD LEAYKAEIAN QGNTMDDEQS LKDALAAYRT AAEAAARIQS 720 AFREKELKAR ASMIQFTNKE EEAKSIIAAM KIQHAFRKYE TRRKIAAASR IQCRFQTWKI 780 RREFLNMRRQ AIRIQAAFRG FQARRQYRKI IWSVGVLEKV ILRWRLKRKG FRGLQVSETA 840 EEEGPPGNDT NQTAEDFYKT SQRQAEERLE RSVVRVQAMF RSKKAQLDYR RMKLTHQEA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:12218065, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA26G00386 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006406788.1 | 0.0 | calmodulin-binding transcription activator 6 | ||||
Swissprot | Q9LSP8 | 0.0 | CMTA6_ARATH; Calmodulin-binding transcription activator 6 | ||||
TrEMBL | V4NP00 | 0.0 | V4NP00_EUTSA; Uncharacterized protein | ||||
STRING | XP_006406788.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4021 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16940.1 | 0.0 | calmodulin binding;transcription regulators |
Publications ? help Back to Top | |||
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