PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00331
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 223aa    MW: 24818.6 Da    PI: 4.4839
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00331genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.3e-183686155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                + y+GVr ++ +g+Wv+eIr p++   ++r++lg+f ta++Aa+a++ a++ ++g
  AA26G00331 36 PSYRGVRMRS-WGKWVSEIRQPRK---NTRIWLGTFATADMAARAHDVAALTIKG 86
                57*****998.**********966...4**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.61E-323696No hitNo description
PfamPF008472.9E-123686IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-203795IPR016177DNA-binding domain
PROSITE profilePS5103222.6033794IPR001471AP2/ERF domain
SMARTSM003803.9E-3637100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-313795IPR001471AP2/ERF domain
PRINTSPR003671.9E-103849IPR001471AP2/ERF domain
PRINTSPR003671.9E-106076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MTSANSCSSS PTSSSSEQFD ESPPRKRIKR DSSSKPSYRG VRMRSWGKWV SEIRQPRKNT  60
RIWLGTFATA DMAARAHDVA ALTIKGSSAV INFPELASLL PRPISNSPRD IQAAAAEAAA  120
MVIGKNDKTP EIEVKAEEID PSLGSCHVTE EEALDEIVEL PNIEGSYDGS VTSRATDVEY  180
CEPSDCWVYP PVMDNNYYEE IFEFNFVELW SFPHNEQLTI GNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-173894360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A6e-1737951473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00362DAPTransfer from AT3G16280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA26G00331
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV LIGHT. {ECO:0000269|PubMed:16307362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406852.14e-82ethylene-responsive transcription factor ERF036
SwissprotQ9LU181e-76ERF36_ARATH; Ethylene-responsive transcription factor ERF036
TrEMBLA0A087HA283e-81A0A087HA28_ARAAL; Uncharacterized protein
STRINGA0A087HA285e-82(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150411618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16280.14e-66ERF family protein