PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA23G00093
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 472aa    MW: 54620.8 Da    PI: 4.3163
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA23G00093genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14e-08419456137
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-H CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtl 37 
                      r +WTt E e l ++ +++G++ Wk I  +++  ++Rt 
       AA23G00093 419 RTPWTTAETEALMKGYEMYGTN-WKQIKDEFPilERRTN 456
                      789*****************99.*********9888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.769414462IPR017930Myb domain
SuperFamilySSF466899.66E-7415455IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-7418455IPR009057Homeodomain-like
CDDcd116607.67E-9421456No hitNo description
PfamPF139218.0E-6422455No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MAVDRVVEAF IKDLLEEIED GVVEEENLQR FEDFVKAIQE ERYLVQESVK EAYCQVAVYS  60
TAKYLTYKQN SREAYTEAIR RIWLRRIMPL CDKVSVLVTR DLLNAFQKLW AAHNDEEARQ  120
NLINEKTREK ALVSLKKLIR DWIPPSDDEN ESMYQSGETE SRAEIEETES MDEARGIEVN  180
QESKPSEAVD KDKDETVETD SMAEAREIED NQKCKAFEAL DKEKDTEDEI GESESMAEAR  240
EIEVNEKCKT SEALAKEKSE IEETDSMVEA REIEESQKCK ASEAVENEEK EIILTSEMER  300
LTARECETEC PPRQIQSSSS AVVKHELVNA LEEEVPSSLN NETLTEQEDD VFRPPPPSTV  360
VRPSLMERRS TAHTYEWDDS IDTSAEELSD EGERSNIKRI VVCPMKRSQS SGSSGRRKRT  420
PWTTAETEAL MKGYEMYGTN WKQIKDEFPI LERRTNYFKL ELFRLVKKIL NY
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA23G00093
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305908.11e-53uncharacterized protein LOC17900333
STRINGBostr.25219s0269.1.p5e-55(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149101111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06910.11e-43TRF-like 7