PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA23G00014 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | ERF | ||||||||
Protein Properties | Length: 218aa MW: 24481.2 Da PI: 9.3496 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.7 | 1.2e-17 | 77 | 127 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr ++ +g+++AeIrd + k r++lg+f t eeAa a+++a+ +l+ge AA23G00014 77 YRGVRKRP-WGKYAAEIRDsT--R-KGIRVWLGTFNTSEEAALAYDQAAFALKGE 127 9*******.**********32..2.24*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.5E-35 | 76 | 140 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-13 | 76 | 127 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.563 | 76 | 134 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-29 | 76 | 134 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-22 | 77 | 136 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.52E-28 | 77 | 133 | No hit | No description |
PRINTS | PR00367 | 1.6E-10 | 77 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 100 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MESQTSFFSQ DFSQDNSSLS SWSSQESWED TFFAFTSSTH YSNDFFTSSS SSPSSSSPSS 60 SSSSSTSEAM MIKERSYRGV RKRPWGKYAA EIRDSTRKGI RVWLGTFNTS EEAALAYDQA 120 AFALKGERAV LNFSVEMVME SLKKMENVNF EDGGSPVMAL KRKHSLRKKV RGKKRFSTFS 180 KNSRSVLMNQ ESKRTEAGVM VFEDLGAEYL EQLLSSCS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-26 | 77 | 141 | 15 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA23G00014 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009118552.1 | 6e-77 | PREDICTED: ethylene-responsive transcription factor ERF094-like | ||||
Swissprot | Q8VYM0 | 1e-65 | ERF93_ARATH; Ethylene-responsive transcription factor 15 | ||||
TrEMBL | A0A3N6QIG8 | 2e-76 | A0A3N6QIG8_BRACR; Uncharacterized protein | ||||
STRING | Bra032433.1-P | 2e-76 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3990 | 18 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31230.1 | 1e-54 | ethylene-responsive element binding factor 15 |
Publications ? help Back to Top | |||
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