PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00569
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 605aa    MW: 67411.3 Da    PI: 5.3233
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00569genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.62.6e-14433479455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h  +ErrRR+++N++f +Lr+++P       +K++K++iL  ++eY+k+L+
  AA21G00569 433 SHVVAERRRREKLNERFITLRSMVPFV-----TKMDKVSILGDTIEYVKQLR 479
                 8999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.1E-508190IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.199429478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-19430501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-12433478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.74E-14433483No hitNo description
Gene3DG3DSA:4.10.280.104.8E-20433499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-17435484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MGGEAVGMQQ MLQAAVQSVD WTYSLFWQLC PQQRVLVWAN GYYNGAIKTR KTTQLAEVTA  60
EEAALERSQQ LRELYETLLA GESSTGNVQA TTKRACTALS PEDLTETEWF YLMCVSFSFP  120
PPSGVPGKAY AGRKHLWLSG ANEVDSRIFS RAILAKTVVC IPLLDGVVEL GTTDKVKENL  180
GFIDHIKSIF NDNHSKPALS EHSTSNPSSS SFPLHITFTE PLPDDAVHIN AHDGAPNQEE  240
EDEEIGRVSS DGADPVGPRQ LMIHADAISE EIRLGSPDDV SNNLHCDFHV LAVCRTETCG  300
VDSVGVESTQ PWLPMPDQLN NASTINEPQA LVTELAMTTM EEEDEGGHYS QTVSALLQAH  360
ATSSAYVSHT PAVQSSFVKW RVQEFNGQHV EKSASSQWVL KFIIFNVPFL HIKNIPREAE  420
ARLPCVAEEL NASHVVAERR RREKLNERFI TLRSMVPFVT KMDKVSILGD TIEYVKQLRK  480
RIHELEARNR QMEMEMETYH QKRMRTSRGG KGKTSEVEVE VEVGVEVSII ESDALLEMRC  540
EYREGLLLDI LQVLKELGIE TTAVHTAVNN GDFAAEIRAK VRGKKASIAE VKRVIHQIIP  600
RLQPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-1881939195Transcription factor MYC3
4rqw_B2e-1881939195Transcription factor MYC3
4rs9_A2e-1881939195Transcription factor MYC3
4yz6_A2e-1881939195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1437442ERRRRE
2438443RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00569
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872462.10.0transcription factor TT8
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLD7LXD50.0D7LXD5_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__2968__AT4G09820.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94222836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.18e-79bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]