PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA21G00415

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Protein Properties

Length: 288aa MW: 32598.8 Da PI: 8.1892

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA21G00415	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	101.6	4.5e-32	32	136	1	98
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS..SEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr..sefel 92 f+kv tpsdv+k++rlv+pk++ae++ ++++e++ l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ ++ +l AA21G00415 32 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRCiGDsgRDSRL 130 89**************************66677899***********************************************443432455666 PP EEEEE- CS B3 93 vvkvfr 98 ++ +++ AA21G00415 131 FIDWRK 136 666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.2E-42	27	145	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.62E-30	29	136	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.58E-25	30	132	No hit	No description
PROSITE profile	PS50863	14.649	32	138	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.5E-29	32	137	IPR003340	B3 DNA binding domain
SMART	SM01019	3.7E-22	32	138	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009908	Biological Process	flower development
GO:0048366	Biological Process	leaf development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MMTNLSLMRT EEDEEVEEKP FEAAVLEKEH MFDKVVTPSD VGKLNRLVIP KQHAERYFPL 60 DSSSNEKGLL LNFEDLTGKS WRFRYSYWNS SQSYVMTKGW SRFVKDKKLD AGDIVSFQRC 120 IGDSGRDSRL FIDWRKRPKI PDPNSITHFP FPRFYSFSNP TPSTSYNLYN NTYGFHQIPR 180 ELGYGYFVRS LERNIPPMVA VADPLVIESV PVMIHGRGQR VVETAVGKRR LRLFGVDMEC 240 GGGGGLMSNM EEESSSSGGS VPRGGGAKSG DQFSKKGKSS LSFDLDDQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	4e-77	27	140	3	116	B3 domain-containing transcription factor NGA1
5os9_B	4e-77	27	140	3	116	B3 domain-containing transcription factor NGA1
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Functional Description ? help Back to Top
Source	Description
UniProt	Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269\|PubMed:16603651}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA21G00415

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020872500.1	1e-131	B3 domain-containing transcription factor NGA1
Refseq	XP_020885656.1	1e-131	B3 domain-containing transcription factor NGA1
Swissprot	O82799	1e-132	NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBL	A0A1J3IYX3	1e-134	A0A1J3IYX3_NOCCA; B3 domain-containing transcription factor NGA1
STRING	fgenesh2_kg.181__3__AT2G46870.1	1e-131	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1307	28	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	1e-122	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Lee BH, et al. The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs. Plant Mol. Biol., 2015. 89(4-5): p. 529-38 [PMID:26433582] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V DNA recognition by Arabidopsis transcription factors ABI3 and NGA1. FEBS J., 2018. 285(21): p. 4041-4059 [PMID:30183137] Sato H, et al. Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187 [PMID:30397148]