PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00391
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Dof
Protein Properties Length: 351aa    MW: 39176.9 Da    PI: 9.1479
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00391genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.31.7e-3863124263
      zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rk+k+sss
  AA21G00391  63 AQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKHKRSSS 124
                 57899*****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-2562114IPR003851Zinc finger, Dof-type
PfamPF027017.4E-3365121IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.68667121IPR003851Zinc finger, Dof-type
PROSITE patternPS01361069105IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009416Biological Processresponse to light stimulus
GO:0009845Biological Processseed germination
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEQQQQQMIP NNNNNIQPPR EPNNNTIRPT TTSISGSISG NISGNNNNTA APGSGLVERK  60
SRAQEKLNCP RCNSTNTKFC YYNNYSLTQP RYFCKGCRRY WTEGGSLRNV PVGGSSRKHK  120
RSSSLQSSTT TTPTSIPDLN PPILFSNQIP NKTSKGSSQD LNLMSFPLIQ DHHHHHHTMS  180
QFLQMPKMES NIQSSSSSSS TSTSSLVSSS SAALELLRTG VLNSRSSGIM MNNISFMPPN  240
NNNNTQMMDY ASSRFPTMVD YKTSNLSFYN NMNRESNEAD QHHQHHQQSR VLFPFGDQMK  300
ELTSTITHEI DHHDDDNQQQ HKNNGNVNNN TSPNNGYWSG MFSSTGGGSS W
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00319DAPTransfer from AT2G46590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00391
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294447.11e-126dof zinc finger protein DOF2.5 isoform X1
RefseqXP_023639741.11e-126dof zinc finger protein DOF2.5 isoform X2
SwissprotQ9ZPY01e-120DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBLR0HPY21e-125R0HPY2_9BRAS; Uncharacterized protein
STRINGXP_006294447.11e-125(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25282673
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46590.11e-88Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]