PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00315
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 785aa    MW: 86635 Da    PI: 5.5776
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00315genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.6e-21120174256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 ++ +++t++q++eLe++F+++++p++++r +L+++l+L+ rqVk+WFqNrR+++k
  AA21G00315 120 KRYHRHTPQQIQELESVFKECPHPDEKQRLDLSRRLNLDSRQVKFWFQNRRTQMK 174
                 567899**********************************************999 PP
2START191.25.1e-603165352206
                 HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT... CS
       START   2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg... 88 
                 la++a++el+k+a+ ++p+W +s        e+++++ ++ ++++++ +ea++++g+v+ ++  lve+l+d+  +W e+++    + +t+e+is+g   
  AA21G00315 316 LALSAMEELMKMAQTRDPLWIRSNdreelNREEYEKSFTSCDKQDGFVSEASKEVGMVIINSLALVETLMDSE-RWAEMFPcmiaRTSTIEAISNGmgg 413
                 6899********************99444444455555555555559**************************.************************* PP

                 ...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
       START  89 ...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                    galqlm aelq+lsplvp R ++f+R+++q+ +g+w++vdvS++ ++    + s+  +++lpSg+l+++++ng+skvtwveh+++++ ++h+ +r+
  AA21G00315 414 trnGALQLMEAELQLLSPLVPvRQVTFLRFCKQHAEGVWAVVDVSLSDRTGSAADGSSPSCRRLPSGCLVQDMPNGYSKVTWVEHTEYDETHIHQSYRQ 512
                 **************************************************9988666667779************************************ PP

                 HHHHHHHHHHHHHHHHTXXXXXX CS
       START 184 lvksglaegaktwvatlqrqcek 206
                 lv+sgla+g k+w a+lqrqce+
  AA21G00315 513 LVSSGLAFGSKRWIAALQRQCEC 535
                 *********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.12E-20105176IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.7E-21112176IPR009057Homeodomain-like
PROSITE profilePS5007117.443116176IPR001356Homeobox domain
SMARTSM003893.1E-18117180IPR001356Homeobox domain
PfamPF000461.5E-18120174IPR001356Homeobox domain
CDDcd000864.53E-18120176No hitNo description
PROSITE patternPS000270151174IPR017970Homeobox, conserved site
PROSITE profilePS5084843.887306538IPR002913START domain
SuperFamilySSF559611.1E-28309535No hitNo description
CDDcd088758.37E-111310534No hitNo description
SMARTSM002349.2E-45315535IPR002913START domain
PfamPF018521.9E-52316535IPR002913START domain
SuperFamilySSF559612.75E-21559772No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MNFTGFFPHE DDDNNGSSVN GGTARFLSDV SFLNQFSGGV VTHSLAKSSP RLSLGLRTDV  60
ENNGEVTRPG ESFEVSVTPR RISMEDEDPE SRSGSDNVAE AVSGDNELDI SDKPLKKKMK  120
RYHRHTPQQI QELESVFKEC PHPDEKQRLD LSRRLNLDSR QVKFWFQNRR TQMKTQIERH  180
ENSLLRQEND KLRAENMTVR EAMRNPMCSH CGGPAVLGEV SIEEHHLRIE NSRLKDELDR  240
VCSLAGKFLG RSNHLPNSAL ELAVGSKNDN CCGGGYPLVP SSGFEIQSPF ISGLAPVSRG  300
LSNTTGLDQR SMYLDLALSA MEELMKMAQT RDPLWIRSND REELNREEYE KSFTSCDKQD  360
GFVSEASKEV GMVIINSLAL VETLMDSERW AEMFPCMIAR TSTIEAISNG MGGTRNGALQ  420
LMEAELQLLS PLVPVRQVTF LRFCKQHAEG VWAVVDVSLS DRTGSAADGS SPSCRRLPSG  480
CLVQDMPNGY SKVTWVEHTE YDETHIHQSY RQLVSSGLAF GSKRWIAALQ RQCECLTILM  540
SSTTLPNRNK PTPISCNGRK SMLKLAQRMT ENFCGGVCAS STQKWSKLKV GNIDEDVRIM  600
TRKSVDDPGE PPGILLSAAT SVWIPVSPRR LFDFLRDEML RSEWDILSNG GPMQEIAHIA  660
KGNDHSNSVS LLRSTTTSAN QSSMLILQET SIDAAGAIVV YAPVDIPAMQ AVMNGGDSAY  720
VALLPSGFAI LPTAAGEDES LLTVAFQILV NSIPTAKLTV ESIETVNNLI SCTIQKIKAA  780
LSCDN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114120LKKKMKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00418DAPTransfer from AT3G61150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00315
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637557.10.0PREDICTED: homeobox-leucine zipper protein HDG1-like isoform X2
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLA0A3P6BG640.0A0A3P6BG64_BRAOL; Uncharacterized protein
STRINGXP_010508114.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]